Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,037,675 – 8,037,768 |
Length | 93 |
Max. P | 0.671680 |
Location | 8,037,675 – 8,037,768 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 85.61 |
Mean single sequence MFE | -20.54 |
Consensus MFE | -15.67 |
Energy contribution | -16.23 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.02 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8037675 93 + 22224390 AGAGAAACAAGUUGUAGUUAACUGUAUAUGUACACCAACGCGAAUGCGGAUGAGCACAAGUUGGCCAAAAUUAAAUUUGGCCUAAAUUUACUU .(((....((.((((.(((..((((((.(((........))).))))))...))))))).))(((((((......)))))))........))) ( -21.70) >DroSec_CAF1 11311 85 + 1 AGA-------GUUGAAGUUAACUGUAUUUGUAUACCAACGCGAAUGCGGAUGAGCAUAAGUUGGCCAAAAUUAA-CUUGGCUUAAAUUUAUUU .((-------(((........((((((((((........)))))))))).(((((.((((((((......))))-)))))))))))))).... ( -21.10) >DroSim_CAF1 606 92 + 1 AGAGAAACAAGUUGAAGCUAACUGUAUUUGUAUACCAACGCGAAUGAAGAUGAACAUAAGUUGGCCAAAAUUAA-CUUGGCUUAACUUUAUUU .(((...((((((((.(((((((.(((((((........)))))))............))))))).....))))-)))).))).......... ( -18.82) >consensus AGAGAAACAAGUUGAAGUUAACUGUAUUUGUAUACCAACGCGAAUGCGGAUGAGCAUAAGUUGGCCAAAAUUAA_CUUGGCUUAAAUUUAUUU ................(((..((((((((((........))))))))))...))).......((((((........))))))........... (-15.67 = -16.23 + 0.56)
Location | 8,037,675 – 8,037,768 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 85.61 |
Mean single sequence MFE | -17.87 |
Consensus MFE | -12.73 |
Energy contribution | -12.40 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.17 |
Mean z-score | -1.95 |
Structure conservation index | 0.71 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8037675 93 - 22224390 AAGUAAAUUUAGGCCAAAUUUAAUUUUGGCCAACUUGUGCUCAUCCGCAUUCGCGUUGGUGUACAUAUACAGUUAACUACAACUUGUUUCUCU ((((.......(((((((......)))))))((((((((..(((((((....)))..))))..))))...)))).......))))........ ( -22.50) >DroSec_CAF1 11311 85 - 1 AAAUAAAUUUAAGCCAAG-UUAAUUUUGGCCAACUUAUGCUCAUCCGCAUUCGCGUUGGUAUACAAAUACAGUUAACUUCAAC-------UCU ...............(((-(((((((((((((((..((((......))))....))))))...))))....))))))))....-------... ( -15.80) >DroSim_CAF1 606 92 - 1 AAAUAAAGUUAAGCCAAG-UUAAUUUUGGCCAACUUAUGUUCAUCUUCAUUCGCGUUGGUAUACAAAUACAGUUAGCUUCAACUUGUUUCUCU .....(((((((((((((-.....))))((((((..(((........)))....))))))...............)))).)))))........ ( -15.30) >consensus AAAUAAAUUUAAGCCAAG_UUAAUUUUGGCCAACUUAUGCUCAUCCGCAUUCGCGUUGGUAUACAAAUACAGUUAACUUCAACUUGUUUCUCU ............((((((......))))))((((..((((......))))....))))((((....))))....................... (-12.73 = -12.40 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:52 2006