Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,009,770 – 8,009,867 |
Length | 97 |
Max. P | 0.558381 |
Location | 8,009,770 – 8,009,867 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -32.83 |
Consensus MFE | -25.59 |
Energy contribution | -25.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.16 |
Mean z-score | -1.46 |
Structure conservation index | 0.78 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8009770 97 + 22224390 ---------------------G-CGGACUUACACUGAAGUACGUGGCCAGAUUGAUGGGAAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGAAGAUAGUAGAGCAG ---------------------(-((.((((......)))).))).((...((((...(....)..((((((.(((.((((((........)))))).))).)))))).))))...)).. ( -31.30) >DroSec_CAF1 12 97 + 1 ---------------------G-CGGACUUACACUGAAGUAGGUGGCCAGAUUGAUGGGGAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCAG ---------------------(-(..((((((......))))))..(((......)))...((..((((((.(((.((((((........)))))).))).))))))...))...)).. ( -32.30) >DroSim_CAF1 20 97 + 1 ---------------------G-CGGACUUACACUGAAGUAGGUGGCCAAAUUGAUGGGGAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCAG ---------------------(-(..((((((......))))))..(((......)))...((..((((((.(((.((((((........)))))).))).))))))...))...)).. ( -31.50) >DroEre_CAF1 138 112 + 1 GU-------UACUCCUUCAGAGACACACUUACACUGAAGUAGGUGGCCAGAUUGAUGGGGAACAGCUUCAUGGCGGUCAGAGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCUG ((-------(.((((.((((.....(((((((......)))))))......)))).)))))))..((((((.(((.(((((((.....))).)))).))).))))))............ ( -39.00) >DroYak_CAF1 22 96 + 1 -----------------------GACACUCACACUGAAGUAGGUGGCCAGAUUGAUGGGAAAGAGCUUCAUGGCGGUCAGAGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGGAG -----------------------....(((.((((......)))).(((......))).......((((((.(((.(((((((.....))).)))).))).))))))......)))... ( -30.20) >DroAna_CAF1 1572 113 + 1 --AAACGACUAUAUUUUC---G-UAUACUCACACUGAAGUAGGUGGCCAGGUUGAUGGGAAAGAGCUUCAUGGCCGUGAGCGUGAUGGGCUGCUGGGCGUGGUGGAGGUAGAAGAGGAG --...........(((((---.-..((((..((((...((.((..((((((((..........)))))(((.(((....).)).))))))..))..))..))))..))))...))))). ( -32.70) >consensus _____________________G_CAGACUUACACUGAAGUAGGUGGCCAGAUUGAUGGGAAACAGCUUCAUGGCGGUCAGCGUGAUGGGCUGCUGGGCGCGAUGGAGAUAGUAGAGCAG ...........................(((.((((......)))).(((......))).......((((((.(((.((((((........)))))).))).))))))......)))... (-25.59 = -25.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:48 2006