Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,007,689 – 8,007,793 |
Length | 104 |
Max. P | 0.671150 |
Location | 8,007,689 – 8,007,793 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 76.90 |
Mean single sequence MFE | -43.67 |
Consensus MFE | -24.27 |
Energy contribution | -26.05 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.28 |
Mean z-score | -1.70 |
Structure conservation index | 0.56 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8007689 104 - 22224390 ---AUCCG-GCAAUGUCGUGGAUGACAGAAUGUGCUGGAUUUGCCUGAGGGGCGAUGAGGAUCACCGCCGAAGGGAUUGGGUGCAUCCGUGUCGCUGUCGCGGCACCA ---(((((-(((.(((((....))))).....))))))))(((((.....)))))...((((((((.((....))....)))).))))(((((((....))))))).. ( -46.40) >DroVir_CAF1 6008 105 - 1 ---ACCAGGACAGUGCCCAUGAUGAGCGCAUGUGUUGGAUCUGCUUGAACACAGAUGAGGAAAGCCUGCGGCACGACUGGCUGCAACCGUGCCGCUGUCGUGGCACCA ---.........(((((.(((((.(((((.((((((.((.....)).))))))....(((....)))))((((((..((....))..))))))))))))))))))).. ( -39.30) >DroSim_CAF1 6249 104 - 1 ---AUCCG-GCAAUACCGCGGAUGACAGGAUGUGCUGGAUUUGCCUGAGGGGCGAUGAGGAUCACCGCCGACGGGAUUGGGUGCAUCCGUGUCGCUGUCGCGGCACCA ---(((((-.(......))))))....(((((..((.(((...((((...((((.((.....)).))))..))))))).))..)))))(((((((....))))))).. ( -44.10) >DroEre_CAF1 6564 104 - 1 ---UUCCG-GAAAUCCCGAGGAGGACAGGAUGUGCUGGAUUUGUCUCACCGGCGAUGAGGAUCAACGUCGCCGGGAUUGGGUGCACCCGUGUCGCUGUCGCGGCACCA ---.....-..((((((((.(((..(((......)))..))).)).....(((((((........)))))))))))))(((....)))(((((((....))))))).. ( -43.80) >DroYak_CAF1 6643 107 - 1 GCCAACUG-AAAAUGCGGAGGAUGACAGGAUGUGCUGGAUUUGCCUGACGGGCGAUGAGGAUCAACGUCGCCGGGAUUGGGUGCAUCCGUGUCGCUGUCGCGGCACCA (((...(.-...).(((..((.((((((((((..((.((((.......(.(((((((........))))))).))))).))..))))).)))))))..)))))).... ( -44.01) >DroAna_CAF1 7344 96 - 1 ---------ACAG---CAUCGACGACAGGAUGUGCUGGAUCUGCCUGACCGGCGACGAGGACCAGCCGCGACGCGACUGGUUGCAUCCUUGUCGCUGUCGCGGCACCA ---------.(((---(((...(....)...))))))....((((((((.(((((((((((((((.(((...))).)))).....))))))))))))))).))))... ( -44.40) >consensus ___AUCCG_ACAAUGCCGAGGAUGACAGGAUGUGCUGGAUUUGCCUGACCGGCGAUGAGGAUCACCGCCGACGGGAUUGGGUGCAUCCGUGUCGCUGUCGCGGCACCA ...........................(((((((((.(((...((((...((((.((.....)).))))..))))))).)))))))))(((((((....))))))).. (-24.27 = -26.05 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:47 2006