Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,002,725 – 8,002,826 |
Length | 101 |
Max. P | 0.567108 |
Location | 8,002,725 – 8,002,826 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.66 |
Mean single sequence MFE | -23.71 |
Consensus MFE | -14.18 |
Energy contribution | -14.46 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.33 |
Mean z-score | -1.66 |
Structure conservation index | 0.60 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8002725 101 - 22224390 UGUUCACACUGGCCUGCAUCUGCGCAGGCCAUGUUGUUUACACGCUAUCAGCUUCUAACAA----CCAAUUAAACUAUACAAGUGAUGGUUUUACAUUGA--UUUGG .........((((((((......)))))))).((((((.....((.....))....)))))----).............(((((((((......)))).)--)))). ( -27.20) >DroSec_CAF1 1656 101 - 1 UGUUCACACUGGCCUGCAUCUGCGCAGGCUAUGUUGUAUACGCGCUAUCAGCUUCCAACAA----CCAAAUAAACUAUACAAGUAAUGGUUUUGCAUUUA--AUUAC .((..((((((((((((......)))))))).).)))..))((((.....)).........----......(((((((.......))))))).)).....--..... ( -22.60) >DroSim_CAF1 1187 103 - 1 UGUUCACACUGGCCUGCAUCUGCGCAGGCUAUGUUGUAUACACGCUAGCAGCUUCUAACUA----CCAAAUAAACUAUACAAGUAAUGGUUUUACAUUGAUUAUCUG (((..((((((((((((......)))))))).).)))..))).((.....)).........----.(((..(((((((.......)))))))....)))........ ( -21.40) >DroEre_CAF1 1681 101 - 1 UGUUCACACUGGCCUGCAUUUCGGCAGGCGGUGUUGCACACGCGCUAUCAGCUGCUUAUAA----GCAAAUAAACUUUUAAAGUGAUCAUUUUACAUUAA--UUUAU (((..((((((.(((((......))))))))))).)))(((((.......))((((....)----)))..............)))...............--..... ( -25.00) >DroYak_CAF1 1682 102 - 1 UGUUCGCACUGGCCUGCAUUUCGGCCGGCGCUGUUAUACACACGCUA---ACUGCUUUCAACACCCCAAAUCAACUGUUAAAGUGAUGAUUUUUCAUAAA--UGUAU .....((.((((((........)))))).))....((((((((..((---((........................))))..)))((((....))))...--))))) ( -22.36) >consensus UGUUCACACUGGCCUGCAUCUGCGCAGGCGAUGUUGUAUACACGCUAUCAGCUUCUAACAA____CCAAAUAAACUAUACAAGUGAUGGUUUUACAUUAA__UUUAG .....(((.((((((((......)))))))))))................................................((((.....))))............ (-14.18 = -14.46 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:45 2006