Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 8,001,698 – 8,001,809 |
Length | 111 |
Max. P | 0.735346 |
Location | 8,001,698 – 8,001,809 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -38.10 |
Consensus MFE | -18.54 |
Energy contribution | -18.85 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.24 |
Mean z-score | -2.20 |
Structure conservation index | 0.49 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8001698 111 - 22224390 ACAUGCCGCAUCACAUGCAGCUGAUGCUGCAGGCAUUCCAGCAGACAGCCAUUGCCACCUGGCAGCCACACAAGCCCAG------CACAAGUGGCGCCGCCGUGGAGAAUGGUCAUG ..((((((.....).((((((....)))))))))))...........((((((.((((.((((.(((((....((...)------)....)))))))))..))))..)))))).... ( -40.30) >DroVir_CAF1 621 105 - 1 AUAUGCCGCAUCACAUGCAGCUCAUGUUGCAGGCAUUUCAACAAACUGCCAUUGCCACUUGGCAGCCGCACAAGCCCAG------CACUAGCUCC------CUAGAGAACGGCCACA ...(((.((......((((((....))))))((((.((.....)).))))..((((....)))))).)))...(((...------(.((((....------)))).)...))).... ( -30.40) >DroPse_CAF1 624 117 - 1 AUAUGCCGCAUCACAUGCAACUGAUGCUGCAGGCCUUCCAGCAGACGGCCAUCGCCACCUGGCAGCCGCAGAAGGCCAGUACCAGCACCAGCGGUGGCUCGCUGGAGAAUGGCCAUG ...(((.((((((........)))))).)))(((((((((((....(((((((((...((((..(((......))).....)))).....))))))))).)))))))...))))... ( -53.10) >DroGri_CAF1 621 111 - 1 ACAUGCCGCAUCACUUGCAGCUCAUGUUGCAGGCCCAUCAACAGACCGCCAUCGCCACAUGGCAGCCGCAAAAGCUGAG------CACUGGCAGUGGAACGCUGGAGAAUGGUCAUA ..((((((.....((((((((....))))))))....((..(((....((((.((((.....((((.......))))..------...)))).))))....)))..)).))).))). ( -36.90) >DroSec_CAF1 630 108 - 1 ACAUGCCGCAUCACAUGCAGCUGAUGCUACAGGCAUUCCAGCAGACAGCCAUUGCCACCUGGCAGCCGCACAAGCCCAG------CACAAGUGGUG---CCAUGGAGAACGGCCAUG .(((((((((((((.(((.((((((((.....))))..)))).....((..(((((....)))))..)).........)------))...))))))---)...(.....))).)))) ( -35.70) >DroMoj_CAF1 621 108 - 1 ACAUGCCGCACCACAUGCAACUCAUGCUACAGGCAUUCCAACAAACAGCCAUUGAGACUUGGCAGCCACACAAGCCCAG------CUCCAGCUCC---GCGCUGGAGAACGGCCACA ..(((((......((((.....)))).....)))))...........((((........))))..........(((...------(((((((...---..)))))))...))).... ( -32.20) >consensus ACAUGCCGCAUCACAUGCAGCUCAUGCUGCAGGCAUUCCAACAGACAGCCAUUGCCACCUGGCAGCCGCACAAGCCCAG______CACAAGCGGCG___CGCUGGAGAACGGCCAUA ....((((..((...((((((....))))))(((..((.....))..((((........)))).))).....................................))...)))).... (-18.54 = -18.85 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:44 2006