Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,998,263 – 7,998,353 |
Length | 90 |
Max. P | 0.722718 |
Location | 7,998,263 – 7,998,353 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 68.48 |
Mean single sequence MFE | -31.15 |
Consensus MFE | -14.61 |
Energy contribution | -16.37 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.32 |
Mean z-score | -1.63 |
Structure conservation index | 0.47 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7998263 90 - 22224390 CUGAAUAAGACCUCGCCGCAACGCAGAUUGUGGUAGCCACCGGC---CACAUCCGGCGGUGGCUGCACCUUGAUCAUCGC------G---GCUUGCUCCCUG ........((.(..(((((..(((.....)))((((((((((.(---(......))))))))))))............))------)---))..).)).... ( -36.60) >DroPse_CAF1 5052 102 - 1 UUGCACAGAACCUCACCGCAUCGAAAGUUGUGAUAAGAGCCGGUUCCUAUCACCGGCAGUGACUGCAACUUGAUCAUCUUGAGCCAAUACUUAUGGCUGAUG (((((.......((((((((.(....).))))......((((((.......)))))).)))).)))))......((((...(((((.......))))))))) ( -28.90) >DroSec_CAF1 4003 90 - 1 CUAAACAAGAUCUCGCCGCAUCGCAGAUUGUAGUAGCCACCGGC---CACAUUCGGCGGUGGCUGCACCUUGAUCAUUGC------U---CCGUGCUCCCUG .....((((((((.((......))))))....((((((((((.(---(......))))))))))))..))))......((------.---....))...... ( -30.50) >DroEre_CAF1 4151 96 - 1 CUGAACAAGAGCUCGCCGCACCGGAGAUUGUGGUAGCCACCGGC---CACAUCCGGCGGUGGCUGCACCUUUAUCAUCGCGCACCUU---GAUUGUUCACUC .((((((((((..(((((((........))))((((((((((.(---(......))))))))))))............)))...)))---..)))))))... ( -35.50) >DroYak_CAF1 3847 90 - 1 CUGAACAAGACCUCGCCGCAUCGGAGAUUAUGGUAGCCACCGGC---CACAUCCGGUGGUGGCUGCACCUUGAUCAUCGC------U---GGUUGCUCCCUG ..............((.((..((..(((((..((((((((((.(---(......))))))))))))....)))))..)).------.---.)).))...... ( -31.30) >DroAna_CAF1 8655 90 - 1 UUGCACAGAACUUCGCCACACCGAAAAUUGUGGUAUACUCCGGA---UAUGUCUAACGGAGGUUGCAACUUAAUCAUCCU------G---UUGAAGUUCCUG .......(((((((((((((........))))))...(((((..---.........)))))...................------.---..)))))))... ( -24.10) >consensus CUGAACAAGACCUCGCCGCAUCGAAGAUUGUGGUAGCCACCGGC___CACAUCCGGCGGUGGCUGCACCUUGAUCAUCGC______U___GCUUGCUCCCUG .(((.((((.......((((........))))((((((((((.(..........).))))))))))..)))).))).......................... (-14.61 = -16.37 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:42 2006