Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 976,981 – 977,099 |
Length | 118 |
Max. P | 0.864138 |
Location | 976,981 – 977,099 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.84 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -3.00 |
Energy contribution | -5.32 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.13 |
Mean z-score | -1.81 |
Structure conservation index | 0.14 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 976981 118 + 22224390 CGCUUAUCAGCCACCUGAUAAGCUAAA-AUUACCCAGGUAAUAGGGAAAGUUUACUUUUCUAGUAUUUCACCCCAUACCAUCCCC-UGUAAGCUGCAUUUAAAUGCAAAAUACUCAGUCA .(((((((((....)))))))))....-(((((....))))).(((((((....)))))))(((((((.......(((.......-.)))...(((((....))))))))))))...... ( -27.60) >DroSec_CAF1 59966 116 + 1 C--UGAUAAG-CAGCUGAUAAGCUAAA-AUUACCCAGGUAGUAGGGAAAGUUUACUUUUCUAGUAUUUCAAAUUAUACCAUCCCCCUAUAAUCUGCAUUUUAAUGCAAAAUCCUAAGUCA .--......(-(((((....)))((((-((....(((((.((((((((((....))))....((((........)))).....)))))).))))).)))))).))).............. ( -22.20) >DroSim_CAF1 39081 116 + 1 C--UGAUAAG-CAGCUGAUAAGCUAAA-AUUACCCAGGUAGUAGGGAAAGUUUACUUUUCUAGUAUUUCAAAUUAUACCAUCCCCUUAUAAUCUGCAUUUUAAUGCAAAAUCCUAAGUCA .--......(-(((((....)))((((-((....(((((.((((((((((....))))....((((........)))).....)))))).))))).)))))).))).............. ( -19.50) >DroEre_CAF1 73160 104 + 1 CGUUC----G-CACCCGAUAAGCUUUAAAUUACCCAGAA--------AAGUUUACAUUCCUC-UUUUAAAACUUCCAUGAUCC--CUAUAAAGUGAUAUUAAAUGCGAAAUCCUCAGUCA ..(((----(-((...((((.((((((.......((...--------((((((.........-.....))))))...))....--...))))))..))))...))))))........... ( -14.08) >DroYak_CAF1 65323 114 + 1 UGUUUAUCAG-CGCCCGAUAAGCUCUA-AUUACCCAGAAGAUAGGG-AAGUUUACAUUCCUC-UAUGUAACUUUCCAUGAUUC--CUAUUGGAUGAUGGUAAAUGCAAAAUCCGCAGUCA .(((((((..-.....)))))))....-.(((((.........(((-(((((.((((.....-.)))))))))))).....((--(....)))....))))).(((.......))).... ( -26.60) >consensus CG_UGAUAAG_CACCUGAUAAGCUAAA_AUUACCCAGGUAAUAGGGAAAGUUUACUUUUCUAGUAUUUCAAAUUAUACCAUCCCCCUAUAAGCUGCAUUUAAAUGCAAAAUCCUCAGUCA ................(((........................(((((((....)))))))................................(((((....))))).........))). ( -3.00 = -5.32 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:09 2006