Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,813 – 19,933 |
Length | 120 |
Max. P | 0.719082 |
Location | 19,813 – 19,933 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -25.01 |
Energy contribution | -24.79 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.61 |
Structure conservation index | 0.99 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.719082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19813 120 - 22224390 AUUCUACGUGUAUGCGCGUAGUUAUAUAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCAACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCGUUUUCCAUUUUUAAGUUCG ...(((((((....))))))).......((((((...(((((((...............)))))))....((((((.......))))))(((.....))).............)))))). ( -25.66) >DroSec_CAF1 7066 120 - 1 AUUCUACGUGUAUGCGCGUAGUUAUAAAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCGACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCAUUUUCCAUUUUUAAUUUCG ...(((((((....))))))).......(((...((((((((((...............)))))))....((((((.......)))))).........)))..))).............. ( -25.06) >DroSim_CAF1 7154 120 - 1 AUUCUACGUGUAUGCGCGUAGUUAUAAAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCGACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCAUUUUCCAUUUUUAAUUUCG ...(((((((....))))))).......(((...((((((((((...............)))))))....((((((.......)))))).........)))..))).............. ( -25.06) >consensus AUUCUACGUGUAUGCGCGUAGUUAUAAAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCGACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCAUUUUCCAUUUUUAAUUUCG ...(((((((....))))))).......(((...((((((((((...............)))))))....((((((.......)))))).........)))..))).............. (-25.01 = -24.79 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:55 2006