Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,990,806 – 7,990,915 |
Length | 109 |
Max. P | 0.900573 |
Location | 7,990,806 – 7,990,915 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 88.69 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -20.95 |
Energy contribution | -20.40 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.17 |
Mean z-score | -1.99 |
Structure conservation index | 0.76 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7990806 109 + 22224390 AGCCUAUCGGAGCUAUCGUUCUUCGAUAACUGCGUCUAUCGUUCGAAACGACGACGGUGGCUAAAAAAUAGCCAAUAAGCUUAAAAUAGCUAUAAUUAUAUCUAGAUAU ....(((((((((....)))))..((((((((((((..((....))...)))).))))(((((.....)))))....((((......)))).......))))..)))). ( -26.10) >DroSec_CAF1 1924 109 + 1 AGCCUAUCGGAGCUAUCGUUCUUCGAUAACUGCGUCUAUCGUUCGAAACAACGACGGUGGCUAAAAAAUAGCCAAUAAGCUUAAAAUAGCUAGAAUUAUAUCUUGAUAU ....(((((((((..(((((.(((((.....(((.....))))))))..)))))..))(((((.....)))))....((((......)))).........)).))))). ( -24.70) >DroEre_CAF1 2944 109 + 1 AGCCUAUCGGAGCUAUCGUUUUUCGAUAGCCGGGCUUAUCGUGCGGAACGACGAUGGUGGCUAAAAAAUACCCAAAAAGCUUAAAAUAGCUAGCAUUAAAUAUGGGUAU (((((((((..(((((((.....))))))(((.((.....)).)))..)..)))))..)))).....(((((((...((((......))))...........))))))) ( -31.54) >consensus AGCCUAUCGGAGCUAUCGUUCUUCGAUAACUGCGUCUAUCGUUCGAAACGACGACGGUGGCUAAAAAAUAGCCAAUAAGCUUAAAAUAGCUAGAAUUAUAUCUAGAUAU ....((((((((........)))))))).....(((((((((.((......))))))((((((.....))))))...((((......))))...........))))).. (-20.95 = -20.40 + -0.55)
Location | 7,990,806 – 7,990,915 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.69 |
Mean single sequence MFE | -30.15 |
Consensus MFE | -24.45 |
Energy contribution | -24.57 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -2.79 |
Structure conservation index | 0.81 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7990806 109 - 22224390 AUAUCUAGAUAUAAUUAUAGCUAUUUUAAGCUUAUUGGCUAUUUUUUAGCCACCGUCGUCGUUUCGAACGAUAGACGCAGUUAUCGAAGAACGAUAGCUCCGAUAGGCU ............................(((((((((((((.....)))))..(((((((((.....))))).)))).((((((((.....))))))))..)))))))) ( -30.70) >DroSec_CAF1 1924 109 - 1 AUAUCAAGAUAUAAUUCUAGCUAUUUUAAGCUUAUUGGCUAUUUUUUAGCCACCGUCGUUGUUUCGAACGAUAGACGCAGUUAUCGAAGAACGAUAGCUCCGAUAGGCU ......(((......)))..........(((((((((((((.....))))))(..(((((......)))))..).((.((((((((.....)))))))).))))))))) ( -30.10) >DroEre_CAF1 2944 109 - 1 AUACCCAUAUUUAAUGCUAGCUAUUUUAAGCUUUUUGGGUAUUUUUUAGCCACCAUCGUCGUUCCGCACGAUAAGCCCGGCUAUCGAAAAACGAUAGCUCCGAUAGGCU (((((((...........((((......))))...))))))).....((((...(((((((...)).)))))......((((((((.....))))))))......)))) ( -29.64) >consensus AUAUCAAGAUAUAAUUCUAGCUAUUUUAAGCUUAUUGGCUAUUUUUUAGCCACCGUCGUCGUUUCGAACGAUAGACGCAGUUAUCGAAGAACGAUAGCUCCGAUAGGCU ............................(((((((((((((.....))))))..(((((((...)).)))))...((.((((((((.....)))))))).))))))))) (-24.45 = -24.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:41 2006