Locus 2997

Sequence ID X_DroMel_CAF1
Location 7,982,685 – 7,982,775
Length 90
Max. P 0.824218
window4915

overview

Window 5

Location 7,982,685 – 7,982,775
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -36.12
Consensus MFE -35.10
Energy contribution -33.78
Covariance contribution -1.32
Combinations/Pair 1.27
Mean z-score -1.21
Structure conservation index 0.97
SVM decision value 0.69
SVM RNA-class probability 0.824218
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7982685 90 - 22224390
AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGUGGCGGGC--AGUGUUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG
..............((((.((((((....(((((......(((((((...((((--......)))).)))))))))))).))))))..)))) ( -35.90)
>DroSec_CAF1 4948 92 - 1
AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGUGGCGGGCACAGUGCUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG
..............((((.((((((....(((((......((((((((((((........)))))..)))))))))))).))))))..)))) ( -36.40)
>DroSim_CAF1 4889 92 - 1
AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGCGGCGGGCACAGUGCUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG
..............((((.((((((....(((((......(((((((...(((((......))))).)))))))))))).))))))..)))) ( -38.00)
>DroEre_CAF1 4897 90 - 1
AAAAAUAACUGUACCGCCUGGCCAGUGUUGGACGGUGCAUAGUACGUGGCGGCU--AGUGUUGGCCAGCGCACUUGUCCCCUGGUUCCGGCG
..............((((.((((((.(..(((((((((...))))(((((((((--(....))))).)).))).))))))))))))..)))) ( -31.80)
>DroYak_CAF1 4952 90 - 1
AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGUAUGGUGCGUGGCGGCC--AGUGUUGGCCAGCGCACUUGUCCGCUGGUUCCGGCG
..............((((.(((((((...(((((......(((((((...((((--......)))).)))))))))))))))))))..)))) ( -38.50)
>consensus
AAAAAUAACUGUACCGCCUGGCCAGUGUUGGGCAGUGAAUGGUGCGUGGCGGGC__AGUGUUGCCUAGCGCACUUGUCCUCUGGUUCCGGCG
..............((((.((((((....(((((......(((((((...((((........)))).)))))))))))).))))))..)))) (-35.10 = -33.78 +  -1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:38 2006