Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,978,479 – 7,978,599 |
Length | 120 |
Max. P | 0.701161 |
Location | 7,978,479 – 7,978,599 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.22 |
Mean single sequence MFE | -44.25 |
Consensus MFE | -25.55 |
Energy contribution | -25.42 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.44 |
Mean z-score | -1.67 |
Structure conservation index | 0.58 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7978479 120 + 22224390 CUGCGGCAAACCAUCGAGGAGGAGCGUCAAAUCUUCGCCGAUAAUGCGGUGGAGAAGUGGCGCACCUUCUUCGAUGCGAUGAAUGCCAACUUUGACGAGAAGGCCAAUUUGGUAAGGGCA ..((((((..((((((((((((.((((((..(((((((((......)))))))))..)))))).)).))))))))).).....))))..((((.....))))(((.....)))....)). ( -51.50) >DroPse_CAF1 496 120 + 1 CUUCGUCACACUAUCGAGGAGGAGCGUCAGCUGUUUGCCGUCAGUGCCGUGGAGAAAUGGCGUACCUUCUUCGAUGCCCUCAACAAGAACUUUGAUGAGAAGGCCAAUCUGGUGCGGUCC ..(((.(((...((((((((((.((((((..(.((..(.((....)).)..)).)..)))))).)).))))))))(((((((.((((...)))).))))..))).......))))))... ( -38.80) >DroGri_CAF1 775 120 + 1 CUGCGAAAUACGGUCGAGGAUGAGCGUCAGACGUUCUCAUUGACCGCGGAGGAGAAGUGGCGCAGCUUCUUCAAUGCCCUCAAGACGAACUUCGACGAGAAGUCGAAUUUGGUGCGUGUC ..((((.....((((((.((.(((((.....))))))).))))))(((..((((((((......))))))))..)))..))...((.((.((((((.....)))))).)).))))..... ( -42.00) >DroWil_CAF1 2488 120 + 1 CUUCGCCAUACCAUCGAAGAUGAACGUCAAUUGUUCUCCAUAACAGCUGUGGAGAAAUGGCGAACCUUUUUCGAUGCUCUCAAUGCGAAUUUCGAGGAGAAGGCCGAAUUGGUCCGGAGU (((((......(((((((((....(((((....(((((((((.....))))))))).))))).....))))))))).((((....((.....))..)))).((((.....))))))))). ( -39.20) >DroAna_CAF1 292 120 + 1 CUGCGGCACACCAUCGAGGAGGAGCGCCAGAUCUUCGCCGUGAGCGCCGUGGAGAAGUGGCGCACCUUCUUCGAUGCGAUGAACGCCAACUUCGACGAGAAGGCCAGCCUGGUGAGGGCG ....(((.((((((((((((((.((((((..(((((((.((....)).)))))))..)))))).)).))))))))).).))........((((.....))))))).((((.....)))). ( -55.20) >DroPer_CAF1 736 120 + 1 CUUCGUCACACUAUCGAGGAGGAGCGUCAGCUGUUUGCCGUCAGUGCCGUGGAGAAAUGGCGUACCUUCUUCGAUGCCCUCAACAAGAACUUUGAUGAGAAGGCCAAUCUGGUGCGGUCC ..(((.(((...((((((((((.((((((..(.((..(.((....)).)..)).)..)))))).)).))))))))(((((((.((((...)))).))))..))).......))))))... ( -38.80) >consensus CUGCGGCACACCAUCGAGGAGGAGCGUCAGAUGUUCGCCGUCAGUGCCGUGGAGAAAUGGCGCACCUUCUUCGAUGCCCUCAACACGAACUUCGACGAGAAGGCCAAUCUGGUGCGGGCC ........((((((((((((((.((((((....(((.(((((.....))))).))).))))))..))))))))))..............((((.....))))........))))...... (-25.55 = -25.42 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:35 2006