Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,969,387 – 7,969,503 |
Length | 116 |
Max. P | 0.835559 |
Location | 7,969,387 – 7,969,503 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -27.73 |
Consensus MFE | -24.53 |
Energy contribution | -25.53 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.06 |
Mean z-score | -2.22 |
Structure conservation index | 0.88 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7969387 116 - 22224390 UAAAUUGAAACUGUGGUACGCCAUCUAAGCCAAUCAACGUGCCUUGGAUGCAAUACUACGAUUCGCACAUACCCUCUUUGGAUAUAUGUACUAUAAUCAACUUAUAUCAAUCUUGA ...(((((....((((((...((((((((.((.......)).))))))))...))))))((((.(.(((((.((.....))...))))).)...))))........)))))..... ( -22.90) >DroSec_CAF1 6939 115 - 1 UAAAUUGAAUCUGUGGUACGCCAUCUAAGCCAAUCAACGUGUCUUGGGUGGAAUACUUCGAUUCGCACAUACCCUUUUGGGAUAUGGGUACCAUAAUCAACUUAUAUCAAUCUUG- (((.((((...((((((((((((((((((.((.......)).))))))))((((......)))))).(((((((....))).)))).)))))))).)))).)))...........- ( -32.20) >DroSim_CAF1 4898 115 - 1 UAAAUUGAAACUGUGGUACGCCAUCUAAGCCAAUUAACGUGUCUUGGUUGGAAUACUUCGAUUCUCACAUACCCUCUUGGGAUAUGGGUACCAUAAUCAACUUAUAUCAAUCUUG- (((.((((...((((((((.(((.(((((.((.......)).))))).)))................(((((((....))).)))).)))))))).)))).)))...........- ( -28.10) >consensus UAAAUUGAAACUGUGGUACGCCAUCUAAGCCAAUCAACGUGUCUUGGAUGGAAUACUUCGAUUCGCACAUACCCUCUUGGGAUAUGGGUACCAUAAUCAACUUAUAUCAAUCUUG_ (((.((((...((((((((.(((((((((.((.......)).)))))))))................(((((((....))).)))).)))))))).)))).)))............ (-24.53 = -25.53 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:34 2006