Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,963,178 – 7,963,338 |
Length | 160 |
Max. P | 0.825769 |
Location | 7,963,178 – 7,963,298 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -41.70 |
Consensus MFE | -33.79 |
Energy contribution | -34.85 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.12 |
Structure conservation index | 0.81 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7963178 120 + 22224390 CUGCAUGCCAUCCUCAAUGAAUCCAAGCUAACGGCGGAAGGCACUCAACUGCAUACGUAUGUGGAGCAACUGUUACCACUACUCCAGGACAACUGGAUGGAGGUGCGGCCGCAGCAGCAA ((((.((((.(((....((....)).((.....))))).)))).....((((((..(((.(((((((....))).)))))))(((((.....))))).....))))))..))))...... ( -39.10) >DroSim_CAF1 13299 120 + 1 CUGCAUGCCAUCCUCAAUGAAUCCAAGCUAACGGCGGAGGGCACUCAACUGCAUACGUAUGUGGAGCAACUGCUACCACUUCUCCAGGACAACUGGAUGGAGGUGCGGCCGCAGCAGCAA .(((.((((.(((....((....)).((.....))))).)))).....((((...(((((.((((((....))).)))(((((((((.....))))).)))))))))...))))..))). ( -42.40) >DroEre_CAF1 14216 120 + 1 CUGCAUACCAUACUCAAUGAAUCCAAGCUAACUGCGGAGGGCACUCAACUGCAUACCUACGUGGAGCAACUGCUUCCACUUCUCCAGGACAACUGGAUGGAGGUGCGUCCGCAGCAGCAA ..........................(((..(((((((.((((......))).(((((..(((((((....)).))))).(((((((.....))))).)))))))).))))))).))).. ( -41.20) >DroYak_CAF1 14525 120 + 1 CUGCAUGCCAUCCUCAAUGAAUCCAAGCUAACUGCGGAAGGCACGCAACUGCAUACGUACGUGCAGCAACUGCUUCCUCUGCUCCAGGACAACUGGAUGGAGGUGCGACCGCAGGAGCAA ((((.((((.(((....((....)).((.....))))).))))((((.((((((......)))))).........((((((.(((((.....)))))))))))))))...))))...... ( -44.10) >consensus CUGCAUGCCAUCCUCAAUGAAUCCAAGCUAACGGCGGAAGGCACUCAACUGCAUACGUACGUGGAGCAACUGCUACCACUUCUCCAGGACAACUGGAUGGAGGUGCGGCCGCAGCAGCAA .(((.((((.(((....((....)).((.....))))).)))).....((((...(((((..(((((....))).)).(((((((((.....))))).)))))))))...))))..))). (-33.79 = -34.85 + 1.06)
Location | 7,963,218 – 7,963,338 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -43.73 |
Consensus MFE | -34.66 |
Energy contribution | -35.98 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.89 |
Structure conservation index | 0.79 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7963218 120 + 22224390 GCACUCAACUGCAUACGUAUGUGGAGCAACUGUUACCACUACUCCAGGACAACUGGAUGGAGGUGCGGCCGCAGCAGCAACAACCUCUGCUCAACCAAGAUGCGGCGGCCAGUCUGCAUG (((..(....((((..(((.(((((((....))).)))))))(((((.....))))).....))))((((((.((((((........)))((......))))).)))))).)..)))... ( -43.40) >DroSim_CAF1 13339 120 + 1 GCACUCAACUGCAUACGUAUGUGGAGCAACUGCUACCACUUCUCCAGGACAACUGGAUGGAGGUGCGGCCGCAGCAGCAACAACCUCUGCUCAACCAAGAUGCGGCGGCCAGUCUGCAUG .........((((.((((((.((((((....))).)))(((((((((.....))))).))))))))((((((.((((((........)))((......))))).)))))).)).)))).. ( -45.50) >DroEre_CAF1 14256 120 + 1 GCACUCAACUGCAUACCUACGUGGAGCAACUGCUUCCACUUCUCCAGGACAACUGGAUGGAGGUGCGUCCGCAGCAGCAACAACCUCUGCUCAACCAAGAUGCGGCGGCCAGUCUGCAUG (((......)))........(((((((....(((((((....(((((.....)))))))))))))).))))).((((......((.((((((......)).)))).)).....))))... ( -39.70) >DroYak_CAF1 14565 120 + 1 GCACGCAACUGCAUACGUACGUGCAGCAACUGCUUCCUCUGCUCCAGGACAACUGGAUGGAGGUGCGACCGCAGGAGCAACAACCUUUGCUCAACCAAGAUGCGGCGGCCAGCCUGCAUG (((.(((.((((...(((((..((((...))))...(((((.(((((.....)))))))))))))))...))))((((((......))))))........)))(((.....))))))... ( -46.30) >consensus GCACUCAACUGCAUACGUACGUGGAGCAACUGCUACCACUUCUCCAGGACAACUGGAUGGAGGUGCGGCCGCAGCAGCAACAACCUCUGCUCAACCAAGAUGCGGCGGCCAGUCUGCAUG (((..(....((((........(((((....))).)).(((((((((.....))))).))))))))((((((.((((((........)))((......))))).)))))).)..)))... (-34.66 = -35.98 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:30 2006