Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,962,698 – 7,962,858 |
Length | 160 |
Max. P | 0.707538 |
Location | 7,962,698 – 7,962,818 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -42.83 |
Consensus MFE | -36.50 |
Energy contribution | -37.00 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.60 |
Structure conservation index | 0.85 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7962698 120 + 22224390 GGGUCGGCGCGAAAGGAAUCAUUCAAGACCCUUGAUGUUCUGCUAGAGGCACUGCAGCCACAAGCAGUGGCGCCCUUCUUCCAUGUCAUAGCCACCUAUUUGCGUUGCGCCAUGACUCAC ((((((((((((..(((((...(((((...))))).)))))(((.(.(((......))).).))).(((((......(......).....))))).........)))))))..))))).. ( -39.30) >DroSim_CAF1 12819 120 + 1 GGGUCGGCGCGAAAGGAAUCAUUCAAGACGCUUGAUGUUCUGCUAGAGGCACUGCAGCCACAGGCAGUGGCGCCCUUCUUCCAUGUCAUAGCCACCUAUUUGCGUUGCGCCAUGACCCAU ((((((((((((..(((((...(((((...))))).)))))((....(((......)))...(((.((((((...........)))))).)))........)).)))))))..))))).. ( -43.20) >DroEre_CAF1 13736 120 + 1 AGGUCGGCGCGACAGGAAUCAUUCAAGACCCUUGACGUUCUGCUGGAGGCCCUGCAGCCACAGGCAGUGGCUCCAUUCUUCCAUGUCAUAGCCACCUAUUUGCGUUGCGCCAUGACCCAC .((((((((((((.(((((...(((((...))))).)))))((((((((...((.((((((.....)))))).))..))))))....((((....))))..))))))))))..))))... ( -44.80) >DroYak_CAF1 14045 120 + 1 AGGUCGGCGCGACAGGAAUCAUUUAAGACCCUUGAUGUCAUGCUGGAGGCCCUGCAGCCGCAGGCAGUGGCGCCCUUCUUCCAUGUCAUUGCCACCUAUUUGCGUUGCGCCAUGACCCAC .(((((((((((((((..((......)).))).((((.((((..(((((....((.(((((.....))))))))))))...)))).)))).............))))))))..))))... ( -44.00) >consensus AGGUCGGCGCGAAAGGAAUCAUUCAAGACCCUUGAUGUUCUGCUAGAGGCACUGCAGCCACAGGCAGUGGCGCCCUUCUUCCAUGUCAUAGCCACCUAUUUGCGUUGCGCCAUGACCCAC ((((((((((((((((((....(((((...))))).((((((((.(.(((......))).).))))).))).......)))).))))...((.........))...)))))..))))).. (-36.50 = -37.00 + 0.50)
Location | 7,962,738 – 7,962,858 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -49.98 |
Consensus MFE | -45.58 |
Energy contribution | -45.57 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.61 |
Structure conservation index | 0.91 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7962738 120 - 22224390 CGAGCAUGAGCAGCGAGUCCUCCUGGAUGGCGGGCAGCACGUGAGUCAUGGCGCAACGCAAAUAGGUGGCUAUGACAUGGAAGAAGGGCGCCACUGCUUGUGGCUGCAGUGCCUCUAGCA .((((((..(((((..((((....)))).((((((((.((....))..((((((..(((......))).((((...)))).......)))))))))))))).))))).))).)))..... ( -45.10) >DroSim_CAF1 12859 120 - 1 CGAGCAUGAGCAGCGAGUCCUCCUGGAUGGCGGGCAGCACAUGGGUCAUGGCGCAACGCAAAUAGGUGGCUAUGACAUGGAAGAAGGGCGCCACUGCCUGUGGCUGCAGUGCCUCUAGCA .((((((..(((((..((((.((.....)).))))....(((((((..((((((..(((......))).((((...)))).......))))))..)))))))))))).))).)))..... ( -47.70) >DroEre_CAF1 13776 120 - 1 CGAGCAUGAGGAGGGAGUCCUCCUGGAUGGCGGGCAGCACGUGGGUCAUGGCGCAACGCAAAUAGGUGGCUAUGACAUGGAAGAAUGGAGCCACUGCCUGUGGCUGCAGGGCCUCCAGCA ...((...((((((....))))))(((.(((..(((((.((..(((....(((...))).....(((((((....(((......))).))))))))))..)))))))...)))))).)). ( -54.10) >DroYak_CAF1 14085 120 - 1 CGAGCAUGAGGAGCGAGUCCUCCUGGAUGGCGGGCAGCACGUGGGUCAUGGCGCAACGCAAAUAGGUGGCAAUGACAUGGAAGAAGGGCGCCACUGCCUGCGGCUGCAGGGCCUCCAGCA ...((..(((((.....))))).((((.(((..(((((.((..(((..((((((..(((......))).((......))........))))))..)))..)))))))...))))))))). ( -53.00) >consensus CGAGCAUGAGCAGCGAGUCCUCCUGGAUGGCGGGCAGCACGUGGGUCAUGGCGCAACGCAAAUAGGUGGCUAUGACAUGGAAGAAGGGCGCCACUGCCUGUGGCUGCAGGGCCUCCAGCA ...((..(((((.....))))).((((.(((..(((((.((..(((..((((((..(((......))).((((...)))).......))))))..)))..)))))))...))))))))). (-45.58 = -45.57 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:28 2006