Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,946,985 – 7,947,118 |
Length | 133 |
Max. P | 0.912087 |
Location | 7,946,985 – 7,947,088 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.81 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -13.89 |
Energy contribution | -14.95 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.73 |
Structure conservation index | 0.65 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7946985 103 + 22224390 G-AGAGAGCACUGUAUCUAA----------AAAGUAUGAGCGACAAAUUGUUGUUGCACAG------AUAUACAUAUGUGUUUACAACAACAACAAUAACAAACUAUUCCACACCCAAAA .-.(.(((((((((((((..----------.......(.(((((((....))))))).)))------))))).....)))))).)................................... ( -14.60) >DroSec_CAF1 9334 119 + 1 G-AGAGAACACUGUACGUAAAAUCAGGCAAAAAGUAUGAGCGACAAAUUGUUGUUGCGUAGCGUAGUACAGAUAUAUGUGUUUGCAACAACAACAAUAACAAACUAUUCCACACCCAAAA (-((((.....(((.(((....(((.((.....)).)))))))))..(((((((((((..(((((.........)))))...)))))))))))..........)).)))........... ( -23.10) >DroSim_CAF1 4007 120 + 1 CCAGAGAACACUGUACGUAAAAUCAGGCAAAAAGUAUGAGCGACAAAUUGUUGUUGCAUAGCGUAGCACAGAUAUAUGUGUUUGCAACAACAACAAUAACAAACUAUUCCACACCCAAAA ...(.(((...(((.(((....(((.((.....)).))))))))).((((((((((....(((.((((((......)))))))))..)))))))))).........)))).......... ( -24.70) >DroYak_CAF1 5216 98 + 1 U-AGAGAGCACCGUACGUAAA---------------------ACGAAUUGUUGUUGCAUAGCGUAGCAUAGGUAUAUGUGUUUGCAACAACAACAAAAACAAGCGAUUCCACACCCAAAA .-.(((.((..(((.......---------------------)))..(((((((((((..(((((((....)).)))))...))))))))))).........))..)))........... ( -22.50) >consensus G_AGAGAACACUGUACGUAAA_________AAAGUAUGAGCGACAAAUUGUUGUUGCAUAGCGUAGCACAGAUAUAUGUGUUUGCAACAACAACAAUAACAAACUAUUCCACACCCAAAA ...............................................(((((((((((..(((((.........)))))...)))))))))))........................... (-13.89 = -14.95 + 1.06)
Location | 7,947,014 – 7,947,118 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -19.50 |
Consensus MFE | -15.69 |
Energy contribution | -16.75 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.05 |
Mean z-score | -2.12 |
Structure conservation index | 0.80 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7947014 104 + 22224390 CGACAAAUUGUUGUUGCACAG------AUAUACAUAUGUGUUUACAACAACAACAAUAACAAACUAUUCCACACCCAAAA-AAAAGCCGCAAGCUAACA-----CACACGCGCACA ......((((((((((...((------(((((....)))))))....)))))))))).......................-....((.((.........-----.....))))... ( -14.74) >DroSec_CAF1 9373 111 + 1 CGACAAAUUGUUGUUGCGUAGCGUAGUACAGAUAUAUGUGUUUGCAACAACAACAAUAACAAACUAUUCCACACCCAAAAAAAAAGCCGCAAGCUAACA-----CACACGCGCACA .......(((((((((((..(((((.........)))))...)))))))))))................................((.((.........-----.....))))... ( -19.84) >DroSim_CAF1 4047 110 + 1 CGACAAAUUGUUGUUGCAUAGCGUAGCACAGAUAUAUGUGUUUGCAACAACAACAAUAACAAACUAUUCCACACCCAAAA-AAAAGCCGCAAGCUAACA-----CACACGCGCACA ......((((((((((....(((.((((((......)))))))))..)))))))))).......................-....((.((.........-----.....))))... ( -21.44) >DroYak_CAF1 5236 113 + 1 --ACGAAUUGUUGUUGCAUAGCGUAGCAUAGGUAUAUGUGUUUGCAACAACAACAAAAACAAGCGAUUCCACACCCAAAA-AAAAGCCGCAAGCUAACACCUCACACACGCGCACA --.....(((((((((((..(((((((....)).)))))...))))))))))).........(((...............-...((.(....))).........(....))))... ( -22.00) >consensus CGACAAAUUGUUGUUGCAUAGCGUAGCACAGAUAUAUGUGUUUGCAACAACAACAAUAACAAACUAUUCCACACCCAAAA_AAAAGCCGCAAGCUAACA_____CACACGCGCACA .......(((((((((((..(((((.........)))))...)))))))))))...............................((.(....)))..................... (-15.69 = -16.75 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:23 2006