Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,945,691 – 7,945,782 |
Length | 91 |
Max. P | 0.954241 |
Location | 7,945,691 – 7,945,782 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 75.28 |
Mean single sequence MFE | -21.97 |
Consensus MFE | -13.04 |
Energy contribution | -14.75 |
Covariance contribution | 1.71 |
Combinations/Pair | 1.31 |
Mean z-score | -2.01 |
Structure conservation index | 0.59 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7945691 91 - 22224390 UGGGCCACAAAUAUUACUGUUAUUUGUACCGCUAUUCACUGGCUUAUUUAUGAACCGGUUCACUCUUGCACGGAUAUCCUGCGAGAAAAAA (((((((((((((.......)))))))...((((.....)))).............)))))).(((((((.((....)))))))))..... ( -25.40) >DroSec_CAF1 8050 90 - 1 UGGGCCACAAAUAUUACUGUUAUUUGUACCGCUACUUACUGGCUAAUUUAUGAACCGGUUCACUCUUGCACGGAUAUCCUGCGAUUA-AAA (((((((((((((.......)))))))...((((.....)))).............))))))...(((((.((....)))))))...-... ( -20.60) >DroSim_CAF1 2718 90 - 1 UGGGCCACAAAUAUUACUGUUAUUUGUACCGCUAUUUACUGGCUAAUUUAUGAACCGGUUCACUCUUGCACGGAUAUCCUGCGAGAA-AAA (((((((((((((.......)))))))...((((.....)))).............)))))).(((((((.((....))))))))).-... ( -25.40) >DroEre_CAF1 10416 87 - 1 UGGACCACAAAUAUUACUGUUAUUAGUGCCGCUAUUCACUGGCUAAUUUCUGAACCGGUUCACCCUGGCAAGGAUAU---GCGAGAA-AAA ((((((.........((((....))))((((........)))).............))))))..((.(((......)---)).))..-... ( -17.80) >DroYak_CAF1 3841 90 - 1 UGGACCACAACUAUUACUGUUAUUAGUACCGUUAUGCGCUGGCUAAUUUAUGAACCGGUUCACUCUUGCAAGGAUAUCCUGCGAGAA-AAA ((((((..(((.......)))((((((..((.....))...)))))).........)))))).(((((((.((....))))))))).-... ( -23.50) >DroAna_CAF1 12364 78 - 1 AAAAGCUUAAA----------AAUUAUACCGUUAUUUAGUGGCCAACCAUGGAACUAGUUCC-AGGCCCAAGGAAAGCCAA-GCUUU-GGA .(((((((...----------.................(.((((.....(((((....))))-))))))..((....))))-)))))-... ( -19.10) >consensus UGGACCACAAAUAUUACUGUUAUUUGUACCGCUAUUCACUGGCUAAUUUAUGAACCGGUUCACUCUUGCAAGGAUAUCCUGCGAGAA_AAA (((((((((((((.......)))))))...((((.....)))).............)))))).(((((((.((....)))))))))..... (-13.04 = -14.75 + 1.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:22 2006