Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,945,242 – 7,945,340 |
Length | 98 |
Max. P | 0.500000 |
Location | 7,945,242 – 7,945,340 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 87.24 |
Mean single sequence MFE | -20.77 |
Consensus MFE | -16.52 |
Energy contribution | -17.03 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.80 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7945242 98 - 22224390 GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAGCGCACAAAGCAGAAACGGGAA ((((.(((((((((......).......((((...(((.((...(((((...))))).......))))).....)))).))).))))).))))..... ( -23.40) >DroSec_CAF1 7609 77 - 1 GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAG--------------------- .....(((((.((((...((((((((...((....)).........(....)))))))))......)))).))))).--------------------- ( -18.30) >DroEre_CAF1 9971 98 - 1 GUUUGUGUUUGUGGCGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAUAGCAGUGCACAAAGCGAAAACGGGAA ((((.(((((...(((..((((((((...((....)).........(....)))))))))((...........))..)))...))))).))))..... ( -19.50) >DroYak_CAF1 3384 98 - 1 GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAGUGCACAAAGCAGAAACGGGAA ((((.(((((.((((...((((((((...((....)).........(....)))))))))......)))).))))).(((.....))).))))..... ( -21.90) >consensus GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAGUGCACAAAGCAGAAACGGGAA .....(((((.((((...((((((((...((....)).........(....)))))))))......)))).)))))...................... (-16.52 = -17.03 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:21 2006