Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,941,520 – 7,941,640 |
Length | 120 |
Max. P | 0.753850 |
Location | 7,941,520 – 7,941,640 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -31.87 |
Consensus MFE | -23.57 |
Energy contribution | -27.40 |
Covariance contribution | 3.83 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.74 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7941520 120 + 22224390 GGUUGCAUCUACUCCACAUGCAACUAGUACAUUUGUCCUGCUUACAGACUAUGUUCAUAAGAUAUAUGUAGAGUCGCGUGUGUGCUCCCUUUCGAUCCGGCAUGGAUCGAAAUGCAUUCU (..(((((......(((((((.(((..(((((.((((......(((.....)))......)))).))))).))).)))))))........((((((((.....)))))))))))))..). ( -37.50) >DroSim_CAF1 16977 120 + 1 GGUUGCAUCUACUCCACAUGCAACUAGUACAUUUGUCCUGCUUACAGACUAUGUUCAUAAGAUAUAUGUAGAGUCGCGUGUGUGCUCCCUUUCGAUCCGGCAUGGAUCGAAAUGCAUUCU (..(((((......(((((((.(((..(((((.((((......(((.....)))......)))).))))).))).)))))))........((((((((.....)))))))))))))..). ( -37.50) >DroYak_CAF1 19238 96 + 1 GGUUGCAUCUACUCCACAUGCAACUAGUACAUUUGUCCUGCUUACAGACUAUGUUCAUAAGAUAUAUGUAGAGUCGCGUAUGUGC--------------------AUCGAAA----UUCU ((((((((.........)))))))).((((((.(((...(((((((...((((((.....))))))))).)))).))).))))))--------------------.......----.... ( -20.60) >consensus GGUUGCAUCUACUCCACAUGCAACUAGUACAUUUGUCCUGCUUACAGACUAUGUUCAUAAGAUAUAUGUAGAGUCGCGUGUGUGCUCCCUUUCGAUCCGGCAUGGAUCGAAAUGCAUUCU ((.(((((......(((((((.(((..(((((.((((......(((.....)))......)))).))))).))).)))))))........((((((((.....))))))))))))).)). (-23.57 = -27.40 + 3.83)
Location | 7,941,520 – 7,941,640 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -30.63 |
Consensus MFE | -23.55 |
Energy contribution | -26.50 |
Covariance contribution | 2.95 |
Combinations/Pair | 1.03 |
Mean z-score | -1.84 |
Structure conservation index | 0.77 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7941520 120 - 22224390 AGAAUGCAUUUCGAUCCAUGCCGGAUCGAAAGGGAGCACACACGCGACUCUACAUAUAUCUUAUGAACAUAGUCUGUAAGCAGGACAAAUGUACUAGUUGCAUGUGGAGUAGAUGCAACC ....(((((((((((((.....)))))))......((.((((.((((((.(((((...((....)).....((((.......))))..)))))..)))))).))))..)).))))))... ( -36.00) >DroSim_CAF1 16977 120 - 1 AGAAUGCAUUUCGAUCCAUGCCGGAUCGAAAGGGAGCACACACGCGACUCUACAUAUAUCUUAUGAACAUAGUCUGUAAGCAGGACAAAUGUACUAGUUGCAUGUGGAGUAGAUGCAACC ....(((((((((((((.....)))))))......((.((((.((((((.(((((...((....)).....((((.......))))..)))))..)))))).))))..)).))))))... ( -36.00) >DroYak_CAF1 19238 96 - 1 AGAA----UUUCGAU--------------------GCACAUACGCGACUCUACAUAUAUCUUAUGAACAUAGUCUGUAAGCAGGACAAAUGUACUAGUUGCAUGUGGAGUAGAUGCAACC ....----......(--------------------(((....(...(((((((((.((.((...(.((((..((((....))))....)))).).)).)).))))))))).).))))... ( -19.90) >consensus AGAAUGCAUUUCGAUCCAUGCCGGAUCGAAAGGGAGCACACACGCGACUCUACAUAUAUCUUAUGAACAUAGUCUGUAAGCAGGACAAAUGUACUAGUUGCAUGUGGAGUAGAUGCAACC ....(((((((((((((.....)))))))......((.((((.((((((.(((((...((....)).....((((.......))))..)))))..)))))).))))..)).))))))... (-23.55 = -26.50 + 2.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:19 2006