Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,924,399 – 7,924,519 |
Length | 120 |
Max. P | 0.693065 |
Location | 7,924,399 – 7,924,519 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -43.46 |
Consensus MFE | -29.45 |
Energy contribution | -29.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.41 |
Mean z-score | -1.49 |
Structure conservation index | 0.68 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7924399 120 - 22224390 GCCGGACUCUUUGGACUGAUCAAUCUGGUGCCCUAUUGCGGCACCAAGUUCGCCGUUCGUGGCUACAUGGCCGCCCUCGUUGAGGAGCUGCGUCAGAAGAACCCACAGAACAACGUAAGU ...((..(((((.(((.....((..((((((((....).)))))))..)).((.((((((((((....)))))).(((...))))))).))))).)))))..))........((....)) ( -40.90) >DroVir_CAF1 325 120 - 1 GCCGGACUCUUUGGCCUGCCCAAUCUGGUGCCCUACUGCGGCACCAAAUUUGCCGUGCGCGGCUAUAUGGCUGCCCUGGCCGAGGAGCUGCGCCAAAAGAAUCCACAGAACAAUGUAAGC ...(((.(((((((((.((((....((((((((....).))))))).....((((.(.((((((....))))))).))))...)).)).).))).))))).)))(((......))).... ( -47.70) >DroGri_CAF1 1535 120 - 1 GCAGGACUCUUUGGCCUGCCCAAUCUCGUCCCGUACUGCGGCACCAAGUUCGCCGUUCGCGGCUACAUGUCUUCCCUGGCCGAGGAGCUCCGCCUGAAGAAUCCUCAGACCAAUGUAAGU ((.(((((((((((((........(..((.((((...(((((.........)))))..))))..))..)........)))))))))).)))))((((.......))))............ ( -38.09) >DroWil_CAF1 318 120 - 1 GCUGGACUCUUUGGCCUGGCCAAUCUGGUGCCCUAUUGUGGUACCAAAUUCGCUGUUCGUGGAUAUAUGCUGGCCCUGGCCGAGGAAUUGCGUCAUGCCAAUCCCAACUCAAAUGUGAGU ..(((..(((((((((.(((((...((((((((....).))))))).((((((.....))))))......)))))..)))))))))((((.(.....))))).)))(((((....))))) ( -45.60) >DroMoj_CAF1 344 120 - 1 GCCGGUCUCUUUGGCCUGGCCAAUUUGGUGCCCUAUUGCGGCACAAAGUUCGCCGUACGUGGCUACAUGGCAGCCCUGGCUGAGGAGCUGCGAAAGCAGAAUCCGCUGUCCAAAGUAAGU (((((((.....)))).(((.(((((.((((((....).))))).))))).)))......)))(((.(((((((....)))).(((.((((....))))..))).....)))..)))... ( -47.60) >DroAna_CAF1 316 120 - 1 GCCGGACUCUUCGGUCUCAUCAACCUGGUGCCCUACUGCGGCACCAAGUUCGCCGUCCGCGGCUACAUGACCGCCCUGGCCGAGGAACUGCGCCAGAAGAACCCCCAAAACAAUGUAAGA ...((..(((((((((.....(((.((((((((....).))))))).))).((((....)))).....))))....((((((......)).)))))))))..))................ ( -40.90) >consensus GCCGGACUCUUUGGCCUGACCAAUCUGGUGCCCUACUGCGGCACCAAGUUCGCCGUUCGCGGCUACAUGGCCGCCCUGGCCGAGGAGCUGCGCCAGAAGAAUCCACAGAACAAUGUAAGU (((((.((((((((((.....(((.(((((((.......))))))).))).((((....))))..............))))))))))))).))........................... (-29.45 = -29.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:13 2006