Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,921,463 – 7,921,583 |
Length | 120 |
Max. P | 0.534828 |
Location | 7,921,463 – 7,921,583 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -44.88 |
Consensus MFE | -26.97 |
Energy contribution | -27.70 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.26 |
Mean z-score | -1.59 |
Structure conservation index | 0.60 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7921463 120 + 22224390 UGAACUGAUGGUCAGCGUACAUCCCAGUGGCCGCCAGCGUCUAAAGUACAUCAUGGCCAAUCCGUCCGAGAAGUCCACCCAACUGAGCCGCCAAAUGGCGCUGACCGUCAUGGAGACGGA .....(((((((((((((.(((.....((((.(((((..........((.((.(((.(.....).))).)).))........))).)).)))).))))))))))))))))((....)).. ( -39.57) >DroVir_CAF1 77 120 + 1 CGAGCUGAUGGUCAGCGUACAUCCAAGUAGUCGCCUGCGACUCAAGUACAUAAUGGGCAAUCCGCAGACACGUUCCGUCCAGCUGAGCGCUGUGAUGGCAUUCAGCGAAAUGGAAACGGA ...((((((((((.((((((......(.(((((....))))))..)))).....((.....)))).))).....(((((((((.....)))).))))))).)))))....((....)).. ( -36.40) >DroSim_CAF1 79 120 + 1 UGAACUGAUGGUCAGCGUGCAUCCCAGUGGCCGCCAGCGUCUAAAGUACAUCAUGGCCAAUCCGUCUGACCAGGCCACCCAACUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA .....(((((((((((((.((((....((((.(((((.(((....).))....(((((..............))))).....))).)).)))))))))))))))))))))((....)).. ( -47.04) >DroEre_CAF1 76 120 + 1 UGAACUGAUGGUCAGUGUGCAUCCCAGUGGCCGCCAGCGUCUGAAGUAUAUCAUGCGCAACCCCUCCAAUCAGGCCACCCAAUUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA .....(((((((((((((.((((...(((((.....((((.(((......))).))))........((((..((...))..)))).)))))..)))))))))))))))))((....)).. ( -45.70) >DroYak_CAF1 79 120 + 1 UGAGCUGAUGGUCAGUGUGCAUCCCAGUGGCCGCCAGCGUCUGAAGUACAUCAUGCGCAACCCGUCCGUGCAGGCCACCCAGCUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA .....(((((((((((((.((((....((((.((((((...............(((((.........)))))((....)).)))).)).)))))))))))))))))))))((....)).. ( -49.00) >DroAna_CAF1 81 120 + 1 CGAACUGAUGGUCAGCGUGCAUCCGAGCGGGAAGCAGCGGCUGAAGUACAUUCUCCGCAAUCCCAGCGUGCACGAGACCCAGCUGAGCAGUCAGAUGGCGCUGACCAUCAUGGAGACGGA .....(((((((((((((((((....((((((....((((..(((.....))).))))..)))).)))))))).....(((.((((....)))).))).)))))))))))((....)).. ( -51.60) >consensus UGAACUGAUGGUCAGCGUGCAUCCCAGUGGCCGCCAGCGUCUGAAGUACAUCAUGCGCAAUCCGUCCGAGCAGGCCACCCAACUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA .....(((((((((((((.((((...(((((...(((.............................................))).)))))..)))))))))))))))))((....)).. (-26.97 = -27.70 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:12 2006