Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,917,589 – 7,917,687 |
Length | 98 |
Max. P | 0.543218 |
Location | 7,917,589 – 7,917,687 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 85.03 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -16.92 |
Energy contribution | -16.67 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.78 |
Structure conservation index | 0.78 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7917589 98 + 22224390 GCUGAACACGGGAUGGGAUUUCUUGAACCAAUAGUAGUGUUGGAAGAAGACCAGAAAGUAGUCCAGUCUAAAAAAAAAAAAGAAGGA--CAGCUUUAGUA (((((((((....(((..((((((...((((((....)))))))))))).)))....)).((((..(((...........))).)))--).).)))))). ( -21.50) >DroSec_CAF1 18005 93 + 1 GCUGAACACGGGAUGGGAUUUCUUGAACCAAUAGUAGUGUUGGAAGAAGACCAGGAAGUAGUCCAGUCUGAAA-----AAGGAAGGA--CAGCUUAAGUA (((....((....(((..((((((...((((((....)))))))))))).)))....)).((((..(((....-----.)))..)))--))))....... ( -23.00) >DroSim_CAF1 21122 93 + 1 GCUGAACACGGGAUGGGAUUUCUUGAACCAAUAGUAGUGUUGGAAGAAGACCAGGAAGUAGUCCAGUCUGAAA-----AAGGAAGGA--CAGCUUUAGUA (((((((((....(((..((((((...((((((....)))))))))))).)))....)).((((..(((....-----.)))..)))--).).)))))). ( -24.10) >DroEre_CAF1 9206 88 + 1 GCUGAACACGGGAUGGGAUUUCUUGAACCAAUAGUAGUGUUGGAAGAAGACCAGGAAGUAGUCCAGUCUGAAA-----AA--AAGGA--CGGAGUU---A ....(((...((((...((((((((..((((((....))))))..(....))))))))).)))).((((....-----..--..)))--)...)))---. ( -20.00) >DroYak_CAF1 21217 94 + 1 GCUGAACACGGGAUGGGAUUUCUUGAACCAAUAGUAGUGUUGGAAGAAGACCAGGAAGUAGUCCAGUCUGAAAUCAA-AA--AACGAACCGGCUUU---A ((((....((......((((((.....((((((....))))))....((((..(((.....))).))))))))))..-..--..))...))))...---. ( -22.00) >DroAna_CAF1 9336 82 + 1 GCUGAACACGGGAUGCGACUUCUUGAACCAGUAGUAGUGCUGGAAGAAGACCAGGAAGUAGUCCAGUCUGAAAAUAA------AGUA--U---------- ..........((((...((((((((..((((((....))))))..(....))))))))).)))).............------....--.---------- ( -19.80) >consensus GCUGAACACGGGAUGGGAUUUCUUGAACCAAUAGUAGUGUUGGAAGAAGACCAGGAAGUAGUCCAGUCUGAAA_____AA__AAGGA__CAGCUUU___A ((((.((((....(((..((((((...((((((....)))))))))))).)))....)).)).))))................................. (-16.92 = -16.67 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:11 2006