Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,911,293 – 7,911,384 |
Length | 91 |
Max. P | 0.970155 |
Location | 7,911,293 – 7,911,384 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.64 |
Mean single sequence MFE | -19.68 |
Consensus MFE | -12.59 |
Energy contribution | -12.95 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.15 |
Mean z-score | -2.05 |
Structure conservation index | 0.64 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.970155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7911293 91 + 22224390 -----ACAAAU--U-----GUAACGAUACUAUGGAAUCUAAACCAAAAUUAGCCUGGUGGAGCCGUGCGCUAAUUGCACAGCAACCUAUGGCUUUCACCACCA -----......--.-----............(((........))).........(((((((((((((((.....)))))((....))..))).)))))))... ( -19.60) >DroVir_CAF1 8162 101 + 1 AUACCCCAAAUCU-GAAAAAUAUCGAAAAU-CAAAAUUCGUACAAAAUUUAGCCUGGAGGAGCCAUGCCCCAAAUGCGAUGCUCCCUAUGGCUAUCGUAACAU .(((.........-.........((((...-.....)))).........((((((((.(((((..(((.......)))..)))))))).)))))..))).... ( -21.20) >DroSec_CAF1 11891 91 + 1 -----ACAAAU--U-----GUAACGAUACUACGGAAUCUAAACCAAAAUUAGCCUGGUGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA -----......--.-----.....(((.(....).)))................(((((((((((((......((((...))))..)))))).)))))))... ( -19.00) >DroEre_CAF1 2970 91 + 1 -----ACAAAU--U-----GUAACGAUACUAUGGAAUCUAAACCAAAAUUAGCCUGAAGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA -----......--.-----.....((.....(((........))).....((((...(((.((.((((.......)))).))..)))..)))).))....... ( -16.40) >DroYak_CAF1 15198 91 + 1 -----ACAAAU--U-----GUAACGAUACUACGGAAUCUGAAACAAAAUUAGCCUGAGGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA -----.....(--(-----((...(((.(....).)))....))))....((((..(((..((.((((.......)))).))..)))..)))).......... ( -21.50) >DroPer_CAF1 6201 95 + 1 ---AAACAAAACAA-----AAAACAAAAAAUCCAAAUUAAAAACAAAAUUAGCCUGGAGGAGCCAUGCCCCAAAUGCGCUGCUCCCUAUGGCUAUCGAAACAU ---...........-----..............................((((((((.(((((..(((.......)))..)))))))).)))))......... ( -20.40) >consensus _____ACAAAU__U_____GUAACGAUACUACGGAAUCUAAACCAAAAUUAGCCUGGAGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA ..................................................((((...(((.((.((((.......)))).))..)))..)))).......... (-12.59 = -12.95 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:09 2006