Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,908,381 – 7,908,481 |
Length | 100 |
Max. P | 0.666255 |
Location | 7,908,381 – 7,908,481 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -29.56 |
Energy contribution | -29.57 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.09 |
Mean z-score | -1.61 |
Structure conservation index | 0.96 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7908381 100 + 22224390 UCAUGUGGCUUUAGGCGGAAAGGAAACCCAGCGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUUGCCAGGAGCCA--AGAGAG ((...((((((..(((((((.((....))((((((((((((.((((((....))))))...).)))).)))))))....)))))))..))))))--...)). ( -34.80) >DroSec_CAF1 9039 102 + 1 UCAUGUGGUUUUAGGCGGAAAGGAAACCCAACGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUUGCCAGGAGCCAAAAGAGAG ((...((((((..(((((((.((....))((((((((((((.((((((....))))))...).)))).)))))))....)))))))..))))))...))... ( -32.40) >DroYak_CAF1 12305 99 + 1 UCAUGUGGUUUUAGGCGGAAAGGA-ACUCAGCGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUAGCCAGGAGCAA--AGAGAG ..((((((....((((.(((..((-(((((((...)))))...(((((....))))))))).))).))))....))))))...((.....))..--...... ( -25.20) >consensus UCAUGUGGUUUUAGGCGGAAAGGAAACCCAGCGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUUGCCAGGAGCCA__AGAGAG ((...((((((..(((((((.((....))((((((((((((.((((((....))))))...).)))).)))))))....)))))))..))))))...))... (-29.56 = -29.57 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:08 2006