Locus 2972

Sequence ID X_DroMel_CAF1
Location 7,905,962 – 7,906,082
Length 120
Max. P 0.588930
window4880

overview

Window 0

Location 7,905,962 – 7,906,082
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.28
Mean single sequence MFE -27.82
Consensus MFE -24.67
Energy contribution -24.93
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -1.57
Structure conservation index 0.89
SVM decision value 0.11
SVM RNA-class probability 0.588930
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7905962 120 - 22224390
UGUUCGAAGUGGAGUGCUAAUUGCGGGGGAUCAGAUGCGAAUGGAAAAAUGUUGAAAUUUAUAAGAUUUUAGCGCCAAAAAAUGCAUUUGAAAAAUGUGAGACUUCAAUGGACAUGACAA
((((((...((((((((.....))......(((((((((..(((.....((((((((((.....))))))))))))).....)))))))))..........)))))).))))))...... ( -29.10)
>DroSec_CAF1 6593 120 - 1
UGUUCGAAGUGGAGUGCUAAUUGCGGGGAAUCCGAUGCGAAUGGAAAAAUGUUGAAAUUUAUAAGAUUUUAGCGCCAAAAAACGCAUUUGAAAAAUGUGAGACUUCAAUGGACAUGACGA
((((((...((((((.(((.(((((.((...))..))))).)))......(((((((((.....))))))))).........((((((.....))))))..)))))).))))))...... ( -27.20)
>DroSim_CAF1 9728 120 - 1
UGUUCGAAGUGGAGUGCUAAUUGCGGGGAAUCCGAUGCGAAUGGAAAAAUGUUGAAAUUUAUAAGAUUUUAGCGCCAAAAAACGCAUUUGAAAAAUGUGAGACUUCAAUGGACAUGACGA
((((((...((((((.(((.(((((.((...))..))))).)))......(((((((((.....))))))))).........((((((.....))))))..)))))).))))))...... ( -27.20)
>DroYak_CAF1 9867 120 - 1
UGUUCGGAGUGGAGUGCUAAUUGCGGGGCAUCCGUUGCGAAUGGAAAAAUGAUGAAAUUUGCACGAUUUUAGCGCCAAAAAAUGCAUUUGAAAAAUGUGAGACUUCAAUGGACAUGACAA
((((((...((((((((.....))((.((.(((((.....))))).......(((((((.....))))))))).)).......(((((.....)))))...)))))).))))))...... ( -27.80)
>consensus
UGUUCGAAGUGGAGUGCUAAUUGCGGGGAAUCCGAUGCGAAUGGAAAAAUGUUGAAAUUUAUAAGAUUUUAGCGCCAAAAAACGCAUUUGAAAAAUGUGAGACUUCAAUGGACAUGACAA
((((((...((((((((.....))......((.((((((..(((.....((((((((((.....))))))))))))).....)))))).))..........)))))).))))))...... (-24.67 = -24.93 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:06 2006