Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,905,763 – 7,905,883 |
Length | 120 |
Max. P | 0.946686 |
Location | 7,905,763 – 7,905,883 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -26.17 |
Energy contribution | -26.68 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.43 |
Structure conservation index | 0.95 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7905763 120 - 22224390 UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG (.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... ( -28.40) >DroSec_CAF1 6396 120 - 1 UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG (.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... ( -28.40) >DroSim_CAF1 9530 120 - 1 UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG (.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... ( -28.40) >DroYak_CAF1 9671 117 - 1 UGUGCGUGUGUUUGUCGAGUGAG--GGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAAAAGAAAUAACGAAA-AAGAGGAAUACACACGCAGAAGCGCG ((((.((((((((.(((.((((.--.((((..((......))))))..)))))..((...........)).......................-..)).)))))))).))))........ ( -24.80) >consensus UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG (.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... (-26.17 = -26.68 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:05 2006