Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,905,524 – 7,905,724 |
Length | 200 |
Max. P | 0.926690 |
Location | 7,905,524 – 7,905,644 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -22.15 |
Energy contribution | -24.21 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.78 |
Structure conservation index | 0.84 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7905524 120 + 22224390 AAAUGUAACGUAACCCACAACGUAAGCGUCUUCUGUACGUCACCACGCUACGUAGGCCACGUAACGGUAUGCUAACGUUACCGACGGCGCCGCAAAACCGCAAAAUCAAAAAAUACAAUA ...((((((((........))))..(((((.....(((((..(((((...))).))..))))).(((((.((....)))))))..))))).((......))............))))... ( -28.30) >DroSec_CAF1 6165 112 + 1 AAAUGUAACGUAACCCACAACGUAAGCGUCUUCUGCACGUCACCACGCUACGUAGGCCACGUAACGGUAUGCUAACGUUACCGACGGCGCCGC--------AAAAUCAAAAAAUACAAUA ...((((((((........))))..(((((......((((..(((((...))).))..))))..(((((.((....)))))))..)))))...--------............))))... ( -25.90) >DroSim_CAF1 9299 112 + 1 AAAUGUAACGUAACCCACAACGUAAGCGUCUUCUGCACGUCACCACGCUACGUAGGCCACGUAACGGUAUGCUAACGUUACCGACGGCGCCGC--------AAAAUCAAAAAAUACAAUA ...((((((((........))))..(((((......((((..(((((...))).))..))))..(((((.((....)))))))..)))))...--------............))))... ( -25.90) >DroYak_CAF1 9432 119 + 1 AAAUGUAACGUAACCCACAACGUA-GCCUCUUCUGUACGUCACCACGCUACGUAGGCAACGUAACGGUAUGCUAACGUUAUCGACGGAGCCGCAAAACCGCAAAAUUAAAAAAUACAAUA ...((((............(((((-((......((.....))....))))))).(((..(((..(((((.((....))))))))))..)))((......))............))))... ( -25.10) >consensus AAAUGUAACGUAACCCACAACGUAAGCGUCUUCUGCACGUCACCACGCUACGUAGGCCACGUAACGGUAUGCUAACGUUACCGACGGCGCCGC________AAAAUCAAAAAAUACAAUA ...((((............(((((.((((...............))))))))).(((..(((..(((((.((....))))))))))..)))......................))))... (-22.15 = -24.21 + 2.06)
Location | 7,905,604 – 7,905,724 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.61 |
Mean single sequence MFE | -25.11 |
Consensus MFE | -19.25 |
Energy contribution | -20.88 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.08 |
Mean z-score | -2.54 |
Structure conservation index | 0.77 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7905604 120 + 22224390 CCGACGGCGCCGCAAAACCGCAAAAUCAAAAAAUACAAUAACAAAAUCGACAAAAUUAUAGAUUUUCAAUGUGCACGUCGGUUUCUUUUUGCUAGCGAAAAUCAACUAGCGCUAGUAUAU ((((((((((.((......)).....................((((((............))))))....)))).))))))........((((((((............))))))))... ( -29.10) >DroSec_CAF1 6245 112 + 1 CCGACGGCGCCGC--------AAAAUCAAAAAAUACAAUAACAAAAUCGACAAAACUAUAGAUUUUCAAUGUGCACGUCGGUUUCUUUUUGCUAGCGAACAGCAACUAGUGCUAGUAUAU ((((((((((...--------((((((.................................))))))....)))).))))))........((((((((...((...))..))))))))... ( -24.51) >DroSim_CAF1 9379 112 + 1 CCGACGGCGCCGC--------AAAAUCAAAAAAUACAAUAACAAAAUCGACAAAAUUAUAGAUUUUCAAUGUGCACGUCGGUUUCUUUUUGCUAGCGAACAGCAACUAGCGCUAGUAAAU ((((((((((...--------((((((.................................))))))....)))).))))))......((((((((((............)))))))))). ( -28.11) >DroYak_CAF1 9511 120 + 1 UCGACGGAGCCGCAAAACCGCAAAAUUAAAAAAUACAAUAACAAAAUCGACAAAAUUAUAGAUUUUCUAUGUGCACGUCGGUUUCUUUUUGCUAACGAAAAACAACUAGCACAAGUAUAC ...((((((((((......))...........................(((.....(((((.....))))).....)))))))))....(((((............)))))...)).... ( -18.70) >consensus CCGACGGCGCCGC________AAAAUCAAAAAAUACAAUAACAAAAUCGACAAAAUUAUAGAUUUUCAAUGUGCACGUCGGUUUCUUUUUGCUAGCGAAAAGCAACUAGCGCUAGUAUAU ((((((((((.((......)).....................((((((............))))))....)))).))))))........((((((((............))))))))... (-19.25 = -20.88 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:04 2006