| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 972,094 – 972,189 |
| Length | 95 |
| Max. P | 0.790561 |
| Location | 972,094 – 972,189 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 85.62 |
| Mean single sequence MFE | -10.30 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.45 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.790561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 972094 95 + 22224390 AGUACCCUUUCCCUUUUCCCCUUUCUUUUUCCAU---------UC-CCCCACCAAUUUCCGAUUUUGUAGCCAGCUUUGGGUCAUUAGGUGACGCCUGUCCAUUU ..................................---------..-...(((((((.(((((..(((....)))..)))))..))).)))).............. ( -10.30) >DroEre_CAF1 68169 88 + 1 AGUACCCUUUCCCUU--------CCCUUUCCCAU---------UCCCCCCACCAAUUUCCGAUUUUGUAGCCAGCUUUGGGUCAUUAGGUGACGCCUGUCCAUUC ...............--------...........---------......(((((((.(((((..(((....)))..)))))..))).)))).............. ( -10.30) >DroYak_CAF1 59807 105 + 1 AGUACCCUUUCCCUUUUCCCCUUUCUUUUCCCAUUCCAUCAAUUCCCCCCACCAAUUUCCGAUUUUGUAGCCAGCUUUGGGUCAUUAGGUGACGCCUGUCCAUUU .................................................(((((((.(((((..(((....)))..)))))..))).)))).............. ( -10.30) >consensus AGUACCCUUUCCCUUUUCCCCUUUCUUUUCCCAU_________UCCCCCCACCAAUUUCCGAUUUUGUAGCCAGCUUUGGGUCAUUAGGUGACGCCUGUCCAUUU .................................................(((((((.(((((..(((....)))..)))))..))).)))).............. (-10.30 = -10.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:05 2006