Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,904,538 – 7,904,638 |
Length | 100 |
Max. P | 0.730038 |
Location | 7,904,538 – 7,904,638 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.56 |
Mean single sequence MFE | -10.47 |
Consensus MFE | -9.73 |
Energy contribution | -10.07 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -0.72 |
Structure conservation index | 0.93 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7904538 100 + 22224390 AUAAUAUAUAUGAAUAAUAUUCACAGUAUAAAGGAAAAUCUCUCAAAAUAUAAAAGUGAAACGAACAAAUCUUUCCAACAAAUCACAUCUUUGGGAAUGU ...................(((((..((((...((.......))....))))...)))))...........(((((((............)))))))... ( -8.40) >DroSec_CAF1 5135 81 + 1 -------------------AUCACAGUAUAAAGGAGAAUCUCUCAAAAUAUAAAAGUGAAACGAUUAAAUCUUUCCAACAAAUCACAUCUUUGGGAAUGU -------------------.((((..((((...(((.....)))....))))...))))............(((((((............)))))))... ( -11.50) >DroSim_CAF1 8255 81 + 1 -------------------AUCACAGUAUAAAGGAGAAUCUCUCAAAAUAUAAAAGUGAAACGACUAAAUCUUUCCAACAAAUUACAUCUUUGGGAAUGU -------------------.((((..((((...(((.....)))....))))...))))............(((((((............)))))))... ( -11.50) >consensus ___________________AUCACAGUAUAAAGGAGAAUCUCUCAAAAUAUAAAAGUGAAACGAAUAAAUCUUUCCAACAAAUCACAUCUUUGGGAAUGU ....................((((..((((...(((.....)))....))))...))))............(((((((............)))))))... ( -9.73 = -10.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:00 2006