Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,904,219 – 7,904,339 |
Length | 120 |
Max. P | 0.801943 |
Location | 7,904,219 – 7,904,339 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.75 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -36.72 |
Energy contribution | -36.98 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.98 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801943 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7904219 120 - 22224390 CUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG (((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... ( -37.70) >DroSec_CAF1 4826 120 - 1 CUGCACUUUGCUGAUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG (((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... ( -37.80) >DroSim_CAF1 7946 120 - 1 CUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG (((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... ( -37.70) >DroYak_CAF1 8038 120 - 1 AUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUGCGAUUGCGGUGCGGCGG .((((((((((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))......))))....)))))).... ( -37.20) >consensus CUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG (((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... (-36.72 = -36.98 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:59 2006