Locus 2964

Sequence ID X_DroMel_CAF1
Location 7,902,520 – 7,902,640
Length 120
Max. P 0.845854
window4864

overview

Window 4

Location 7,902,520 – 7,902,640
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.50
Mean single sequence MFE -24.19
Consensus MFE -23.75
Energy contribution -23.88
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -1.53
Structure conservation index 0.98
SVM decision value 0.77
SVM RNA-class probability 0.845854
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7902520 120 + 22224390
AUAAUUUGCCUUUUGCCGAUAUUCCUAAAUGACAGUGGACAAAUUGCAUUCAAGUCGCACUUUAAAAUCCAUUGUACAGUUAAUUGGAAAGUCCCUGGUUUUCAUUACGGUUUUCUUAAU
.......(((....((((((.((((....((((((((((.(((.(((.........))).)))....)))))))).)).......)))).)))...))).........)))......... ( -19.42)
>DroSec_CAF1 3112 120 + 1
AUAAUUUGCCUUUUGCCGAUAUUCCUAAAUGACAGUGGACAAAUUGCAUUCAAGUUGCACUUUAAAAUCCAUUGUACAGUUAAUUGGAAUGUCUCUGGCUAUCAUUAUGCUUUCCUUAAU
..............(((((((((((....((((((((((.(((.((((.......)))).)))....)))))))).)).......))))))))...)))..................... ( -27.20)
>DroSim_CAF1 6233 120 + 1
AUAAUUUGCCUUUUGCCGAUAUUCCUAAAUGACAGUGGACAAAUUGCAUUCAAGUUGCACUUUAAAAUCCAUUGUACAGUUAAUUGGAAUGUCUCUGGCUUUCAUUAUGGUUUCCUUAAU
.......(((....(((((((((((....((((((((((.(((.((((.......)))).)))....)))))))).)).......))))))))...))).........)))......... ( -27.72)
>DroYak_CAF1 6330 119 + 1
AUAAUUUCCCUUUUGCCGAUAUUCCUAAAUGACAGUGGACA-AUUGCAUUUAAGUUGCACUCUAAAAUCCAUUGUACAGUUAAUUGGAAUAUUUCUGGUUCCCAUAAUGGUUUCUUUAAU
..............(((((((((((....((((((((((..-..((((.......))))........)))))))).)).......))))))))..(((...)))....)))......... ( -22.40)
>consensus
AUAAUUUGCCUUUUGCCGAUAUUCCUAAAUGACAGUGGACAAAUUGCAUUCAAGUUGCACUUUAAAAUCCAUUGUACAGUUAAUUGGAAUGUCUCUGGCUUUCAUUAUGGUUUCCUUAAU
..............(((((((((((....((((((((((.(((.((((.......)))).)))....)))))))).)).......))))))))...)))..................... (-23.75 = -23.88 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:52 2006