Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,901,474 – 7,901,593 |
Length | 119 |
Max. P | 0.522968 |
Location | 7,901,474 – 7,901,593 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.76 |
Mean single sequence MFE | -18.09 |
Consensus MFE | -12.79 |
Energy contribution | -13.42 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.09 |
Mean z-score | -1.65 |
Structure conservation index | 0.71 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7901474 119 + 22224390 GUGGGUUACAUAAACAAAAAAUAAAUAAUG-AGGCCCACAAACAAACAGAUAGAAACGAAAAUAACAAUCACAAUGUACCACUAAAAGUGCGGCGGUUGCCAUAAACAAUAUGCGACACC ((((((..(((................)))-..))))))................................(..(((((........)))))..)(((((.(((.....))))))))... ( -20.09) >DroSec_CAF1 2095 115 + 1 GUGGGUUACAUAAACAAAAAAUAAAUAAUG-AUGCCCACAA----ACAGAUAAAAACGAAACUAACAAUCAAAAUGUACCACUAAAAGUGCGGCGGUUGCCAUAAACAAUAUGCGACACC ((((((..(((................)))-..))))))..----.............................(((((........)))))...(((((.(((.....))))))))... ( -17.99) >DroSim_CAF1 5208 116 + 1 GUGGAUUACAUAAACAAAAAAUAAAUAAUGGAUGCCCACAA----ACAGAUAAAAACGAAACUAAUUAUCAAAAUGUACCACUAAAAGUGCGGCGGUUGCCAUAAACAAUAUGCGACACC ((((..(((((.................(((....)))...----...(((((............)))))...))))))))).........((..(((((.(((.....)))))))).)) ( -16.60) >DroYak_CAF1 5236 117 + 1 UAGGGUUACAUAAACAAAAAAUAAAUAAUG-GGGCCCACAAACAAACAGACAGAAACGAAACUAACAAUUACAAUCU--CGCUAAAAGUGCGGCAGUUGCCAUAAACAAUAUGCGACACC ..((((..(((................)))-..)))).......................................(--(((.......))))..(((((.(((.....))))))))... ( -17.69) >consensus GUGGGUUACAUAAACAAAAAAUAAAUAAUG_AGGCCCACAA____ACAGAUAAAAACGAAACUAACAAUCAAAAUGUACCACUAAAAGUGCGGCGGUUGCCAUAAACAAUAUGCGACACC ((((((..(((................)))...))))))...................................(((..(((.....)))..)))(((((.(((.....))))))))... (-12.79 = -13.42 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:45 2006