Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 970,942 – 971,047 |
Length | 105 |
Max. P | 0.976183 |
Location | 970,942 – 971,033 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -20.43 |
Consensus MFE | -12.29 |
Energy contribution | -14.53 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.18 |
Structure conservation index | 0.60 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 970942 91 + 22224390 --------------------CACACAU--------GGAGAGCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAA --------------------.......--------...((((((.................(((((.................)))))..(((((((.....)))))))))))))-.... ( -22.43) >DroSec_CAF1 53884 91 + 1 --------------------CACACAU--------GGAGAGCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAA --------------------.......--------...((((((.................(((((.................)))))..(((((((.....)))))))))))))-.... ( -22.43) >DroEre_CAF1 66976 91 + 1 --------------------CACACAU--------GGAGAGCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAA --------------------.......--------...((((((.................(((((.................)))))..(((((((.....)))))))))))))-.... ( -22.43) >DroYak_CAF1 58687 92 + 1 A-------------------CACACAU--------GGAGAGCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAA .-------------------.......--------...((((((.................(((((.................)))))..(((((((.....)))))))))))))-.... ( -22.43) >DroMoj_CAF1 113309 120 + 1 ACACAGAUAGAGCACAUACACCCAUAUAAAGUAGCCGAAAGCAAAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAAAAGUGGUCGCCACUCUCGAA .....((.((.((((.(((...........)))(.(....))...))))............(((((.................)))))..(((((((.....)))))))...)).))... ( -22.53) >DroAna_CAF1 43037 75 + 1 --------------------GAGUCCU---------GGCAGCCGAGUGCAUGAAUAUUUCACAAGGAUAAAUAAGGAUAAAAACUUGAAGCCACUA------------GCCACUU-G--- --------------------......(---------(((..((..(((.(........))))..)).....((((........))))..))))...------------.......-.--- ( -10.30) >consensus ____________________CACACAU________GGAGAGCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU_GAAA ......................................((((((.................(((((.................)))))..(((((((.....)))))))))))))..... (-12.29 = -14.53 + 2.24)
Location | 970,942 – 971,033 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -20.06 |
Consensus MFE | -14.73 |
Energy contribution | -15.06 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.26 |
Mean z-score | -2.01 |
Structure conservation index | 0.73 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 970942 91 - 22224390 UUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGCUCUCC--------AUGUGUG-------------------- ....-.(((((.((((((.....))))))((.((((..((((((..............))))))..)))).))...)))))....--------.......-------------------- ( -19.84) >DroSec_CAF1 53884 91 - 1 UUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGCUCUCC--------AUGUGUG-------------------- ....-.(((((.((((((.....))))))((.((((..((((((..............))))))..)))).))...)))))....--------.......-------------------- ( -19.84) >DroEre_CAF1 66976 91 - 1 UUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGCUCUCC--------AUGUGUG-------------------- ....-.(((((.((((((.....))))))((.((((..((((((..............))))))..)))).))...)))))....--------.......-------------------- ( -19.84) >DroYak_CAF1 58687 92 - 1 UUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGCUCUCC--------AUGUGUG-------------------U ....-.(((((.((((((.....))))))((.((((..((((((..............))))))..)))).))...)))))....--------.......-------------------. ( -19.84) >DroMoj_CAF1 113309 120 - 1 UUCGAGAGUGGCGACCACUUUUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUUUGCUUUCGGCUACUUUAUAUGGGUGUAUGUGCUCUAUCUGUGU ....((((((((((((((.....)))))))))(((((....((....)).....))))).........(((((((((.((.....))..........))))))))).)))))........ ( -29.70) >DroAna_CAF1 43037 75 - 1 ---C-AAGUGGC------------UAGUGGCUUCAAGUUUUUAUCCUUAUUUAUCCUUGUGAAAUAUUCAUGCACUCGGCUGCC---------AGGACUC-------------------- ---.-..(..((------------(((((.....(((........)))..........((((.....)))).)))).)))..).---------.......-------------------- ( -11.30) >consensus UUUC_AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGCUCUCC________AUGUGUG____________________ ......(((((.((((((.....))))))((.((((..((((((..............))))))..)))).))...)))))....................................... (-14.73 = -15.06 + 0.32)
Location | 970,954 – 971,047 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -18.47 |
Energy contribution | -18.45 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.10 |
Mean z-score | -2.26 |
Structure conservation index | 0.75 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784816 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 970954 93 + 22224390 GCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAAGUGGACC------AA------CAGCA-------------- ((......(((((.....)))))...........((..............(((((((.....)))))))(..((.-...))..).))------..------..)).-------------- ( -20.70) >DroVir_CAF1 115647 119 + 1 GCAAAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAAAAGUGGUCGCCGCUC-CGAAAUGGACCUGGGCCAAAGGAUGCAGCAUCAGCACCAGCAGC ((...((((.(((........(((((.................)))))...((((((.....))))))((.((((-(....(((.(....))))..))).)).)).)))))))..))... ( -33.93) >DroSec_CAF1 53896 93 + 1 GCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAAGUGGACC------AA------CAGCA-------------- ((......(((((.....)))))...........((..............(((((((.....)))))))(..((.-...))..).))------..------..)).-------------- ( -20.70) >DroEre_CAF1 66988 93 + 1 GCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAAGUGGACC------AA------CAGCA-------------- ((......(((((.....)))))...........((..............(((((((.....)))))))(..((.-...))..).))------..------..)).-------------- ( -20.70) >DroYak_CAF1 58700 93 + 1 GCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU-GAAAGUGGACC------AG------CAGCA-------------- ((.....))............(((((.................)))))...((((((.....))))))((((((.-(........).------))------)))).-------------- ( -23.73) >DroMoj_CAF1 113349 114 + 1 GCAAAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAAAAGUGGUCGCCACUCUCGAAAUGGAGCUGGACCAAAGUGUGCAGCAUCAA------CGGC ((...((((.((.(((((((.(((((.................)))))..(((((((.....)))))))(((((((......)))).)))...))))))).))))))...------..)) ( -28.93) >consensus GCAGAGUGCAUGAAUAUUUUAUGAAGAUAAAUAAGGAUAAAAACUUCAAACGACCACGAUAAGUGGUCGCUGCUU_GAAAGUGGACC______AA______CAGCA______________ ......(((............(((((.................)))))..(((((((.....)))))))(((((.....)))))...................))).............. (-18.47 = -18.45 + -0.03)
Location | 970,954 – 971,047 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.17 |
Mean single sequence MFE | -25.96 |
Consensus MFE | -18.33 |
Energy contribution | -17.97 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.11 |
Mean z-score | -2.87 |
Structure conservation index | 0.71 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 970954 93 - 22224390 --------------UGCUG------UU------GGUCCACUUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGC --------------.((((------((------((.......))-.))))))((((((.....))))))((.((((..((((((..............))))))..)))).))....... ( -21.74) >DroVir_CAF1 115647 119 - 1 GCUGCUGGUGCUGAUGCUGCAUCCUUUGGCCCAGGUCCAUUUCG-GAGCGGCGACCACUUUUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUUUGC ...((.((((((((.(((((.(((..((((....).)))....)-)))))))((((((.....))))))...(((((....((....)).....)))))........))).)))))..)) ( -37.00) >DroSec_CAF1 53896 93 - 1 --------------UGCUG------UU------GGUCCACUUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGC --------------.((((------((------((.......))-.))))))((((((.....))))))((.((((..((((((..............))))))..)))).))....... ( -21.74) >DroEre_CAF1 66988 93 - 1 --------------UGCUG------UU------GGUCCACUUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGC --------------.((((------((------((.......))-.))))))((((((.....))))))((.((((..((((((..............))))))..)))).))....... ( -21.74) >DroYak_CAF1 58700 93 - 1 --------------UGCUG------CU------GGUCCACUUUC-AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGC --------------.((((------((------((.......))-.))))))((((((.....))))))((.((((..((((((..............))))))..)))).))....... ( -24.14) >DroMoj_CAF1 113349 114 - 1 GCCG------UUGAUGCUGCACACUUUGGUCCAGCUCCAUUUCGAGAGUGGCGACCACUUUUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUUUGC ..((------.((..((((.((......)).))))..))...))((((((((((((((.....)))))))).(((((....((....)).....))))).............)))))).. ( -29.40) >consensus ______________UGCUG______UU______GGUCCACUUUC_AAGCAGCGACCACUUAUCGUGGUCGUUUGAAGUUUUUAUCCUUAUUUAUCUUCAUAAAAUAUUCAUGCACUCUGC ...............................................(((((((((((.....)))))))).(((((....((....)).....)))))...........)))....... (-18.33 = -17.97 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:04 2006