Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,900,022 – 7,900,142 |
Length | 120 |
Max. P | 0.706962 |
Location | 7,900,022 – 7,900,142 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -48.98 |
Consensus MFE | -48.47 |
Energy contribution | -48.35 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.99 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7900022 120 - 22224390 AUCCACCGGUUCUGGUACAUCCUCGGCAGCAGUUACCAGCGGACCAGGUAGUGGCUCCACCAAGGUGUCAGUCGCUGCCUCAUCCGCACAACAGUCCGGCCUGCAAGGAGCGACGGGAGC ........(((((.((...((((..(((((........(((((..(((((((((((.(((....)))..)))))))))))..)))))((....))...).)))).))))...)).))))) ( -48.10) >DroSec_CAF1 646 120 - 1 AUCCACCGGUUCUGGUACAUCCUCGGCAGCAGUUACCAGCGGACCAGGUAGUGGCUCCACGAAAGUGUCAGUCGCUGCCUCAUCCGCACAACAGUCCGGCCUGCAAGGAGCGACGGGAGC ........(((((.((...((((..(((((........(((((..(((((((((((.(((....)))..)))))))))))..)))))((....))...).)))).))))...)).))))) ( -50.40) >DroSim_CAF1 3763 120 - 1 AUCCGCCGGUUCUGGUACAUCCUCGGCAGCAGUUACCAGCGGACCAGGUAGUGGCUCCACGAAAGUGUCAGUCGCUGCCUCAUCCGCACAACAGUCCGGCCUGCAAGGAGCGACGGGAGC .((((((((..(((..........((.........)).(((((..(((((((((((.(((....)))..)))))))))))..)))))....))).))))).(((.....)))...))).. ( -51.30) >DroYak_CAF1 3775 120 - 1 AACCACCGGUUCUGGUACAUCCUCGGCAGCAGUUACCAGCGGACCAGGUAGUGGCUCCACCAAAGUGUCAGCGGCUGCCUCAUCCGCGCAACAGUCCGGCCUGCAAGGAGCGACGGGAGC ........(((((.((...((((..((((.........(((((..(((((((.(((.(((....)))..))).)))))))..)))))((.........)))))).))))...)).))))) ( -46.10) >consensus AUCCACCGGUUCUGGUACAUCCUCGGCAGCAGUUACCAGCGGACCAGGUAGUGGCUCCACCAAAGUGUCAGUCGCUGCCUCAUCCGCACAACAGUCCGGCCUGCAAGGAGCGACGGGAGC ........(((((.((...((((..(((((........(((((..(((((((((((.(((....)))..)))))))))))..)))))((....))...).)))).))))...)).))))) (-48.47 = -48.35 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:41 2006