Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,899,862 – 7,899,982 |
Length | 120 |
Max. P | 0.571706 |
Location | 7,899,862 – 7,899,982 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -60.55 |
Consensus MFE | -56.62 |
Energy contribution | -57.12 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.94 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7899862 120 + 22224390 UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCGCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA ..(((.((((((((((((.((....((((..(((.(((.(((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). ( -60.40) >DroSec_CAF1 486 120 + 1 UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCUCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA ..(((.((((((((((((.((....((((..(((.((((.((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). ( -59.10) >DroSim_CAF1 3603 120 + 1 UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCUCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA ..(((.((((((((((((.((....((((..(((.((((.((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). ( -59.10) >DroYak_CAF1 3615 120 + 1 UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCGCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGCCGGGCGGCGGUCGCUCCUCCCGCACCGGA ..(((.((((((((.(((((.......))))).)))(((.((.(((((((((.(((.....(...((((((((((...))))).))))).)))).))))))).)).))))))))))))). ( -63.60) >consensus UACCGUGUGCGGUGGCAUUGUGCUAAUCGGUGGUAUGGACGGUGCACCGCCGGCCGUCGAUGAAACCGUGCCGCCCAUGGCGGAUACGGGUCGGGCGGCGAUCGCUCCUCCCGCACCGGA ..(((.((((((((((((.((....((((..(((.(((.(((....)))))))))..))))...)).))))))))............(((..(((((.....)))))..)))))))))). (-56.62 = -57.12 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:40 2006