Locus 2955

Sequence ID	X_DroMel_CAF1
Location	7,899,429 – 7,899,542
Length	113
Max. P	0.709390

overview

Window 0

Location	7,899,429 – 7,899,542
Length	113
Sequences	4
Columns	113
Reading direction	forward
Mean pairwise identity	98.08
Mean single sequence MFE	-46.50
Consensus MFE	-44.65
Energy contribution	-44.90
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-1.80
Structure conservation index	0.96
SVM decision value	0.37
SVM RNA-class probability	0.709390
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7899429 113 + 22224390
AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACACCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCCACUCCGACGCUCACGCCCGCAUUC
..((...(((.((.(((((((..(((..((((..((((((.((((((.((........)).))).)).).))))))......))))..)))..))))))).))))).)).... ( -43.70)
>DroSec_CAF1 62 113 + 1
AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCCACUCCGACGCUCACGCCCGCAUUC
..((...(((.((.(((((((..(((..((((..((((((.((((((.((........)).)))).).).))))))......))))..)))..))))))).))))).)).... ( -45.20)
>DroSim_CAF1 3173 113 + 1
AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCGACUCCGACGCUCACGCCCGCAUUC
.(((....)))((.(((((....(((.(((((((..((.....((((.((........)).)))).)).)))))))...)))(((((((....))))))).))))).)).... ( -47.90)
>DroYak_CAF1 3185 113 + 1
AGGCAUUGGCCGUCGGCGUGGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCGACUCCGACGCUGACGCCCGCAUUC
.(((....)))((.(((((....(((.(((((((..((.....((((.((........)).)))).)).)))))))...)))(((((((....))))))).))))).)).... ( -49.20)
>consensus
AGGCAUUGGCCGUCGGCGUUGUUGUGUCCGCCUUCCGUUUGACGCCCUUCUUUAUUUUGGCGGGCUGCUGAGGCGGUAUCACGGCGUCCACUCCGACGCUCACGCCCGCAUUC
.(((....)))((.(((((....(((.(((((((..((.....((((.((........)).)))).)).)))))))...)))((((((......)))))).))))).)).... (-44.65 = -44.90 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:39 2006