Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,899,187 – 7,899,280 |
Length | 93 |
Max. P | 0.748017 |
Location | 7,899,187 – 7,899,280 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 70.21 |
Mean single sequence MFE | -17.40 |
Consensus MFE | -9.13 |
Energy contribution | -9.47 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.17 |
Mean z-score | -1.82 |
Structure conservation index | 0.52 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7899187 93 + 22224390 AAUUCACGCUUUUGAAUCAAUCUAGUUGAUCUAAUAGAUUGGCACACUUUGUGUGA--------------ACUCCAAAAAAAAAUAC-ACUCCUGAAUAUAAACUUAU-------- ..(((((((...((..((((((((..........))))))))..))....))))))--------------)................-....................-------- ( -15.30) >DroSim_CAF1 2912 107 + 1 AAUUCAGGAUUUUAUACCAAUCUAGCUGACCUAAUAGAUUGGCACACUUUGUGUUAAUUACAAAAAAUGAACUCCAAAG-AAGAUACAACUCCUGAAUAUAAACUUAU-------- .((((((((.......((((((((..........))))))))....(((((.(((.(((......))).)))..)))))-..........))))))))..........-------- ( -23.50) >DroYak_CAF1 2917 113 + 1 AAUUCAUGAUUUCAGAUCAAUCUAGCUGACUUUAUGUAUUGGCGCACAUUGAGUGAAUUACAAAAAAUUAACCCCAAAG-AU--UUUGACUCCUGAAUAUAAACAUAUAAAUAUAU .(((((.((.((.(((((......(((.((.....))...))).(((.....))).......................)-))--)).)).)).))))).................. ( -13.40) >consensus AAUUCACGAUUUUAAAUCAAUCUAGCUGACCUAAUAGAUUGGCACACUUUGUGUGAAUUACAAAAAAU_AACUCCAAAG_AA_AUAC_ACUCCUGAAUAUAAACUUAU________ .(((((..........((((((((..........))))))))(((((...)))))......................................))))).................. ( -9.13 = -9.47 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:37 2006