Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,897,967 – 7,898,087 |
Length | 120 |
Max. P | 0.500000 |
Location | 7,897,967 – 7,898,087 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -51.87 |
Consensus MFE | -47.31 |
Energy contribution | -47.53 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -1.60 |
Structure conservation index | 0.91 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7897967 120 - 22224390 CAUCCCCGAUGAGCCGGUAGCCAAUGCGGCCCACCAUCACGGACAUGGCCACGGGCAUGGUCAUGGCCAUGGCCACGGUCACGGGCAUGGUCACGGACAUGGUCAUGGUCACGGAUACGG .(((((((.(((...(((.(((.....)))..))).))))))...((((((.((.((((..(.((((((((.((.((....)))))))))))).)..)))).)).)))))).)))).... ( -52.30) >DroSim_CAF1 1701 120 - 1 CAUCCCCGAUGAGCCGGUAGCCAACGCAGCCCACCAUCACGGACAUGGCCACGGGCAUGGUCAUGGCCAUGGCCACGGUCACGGGCAUGGUCACGGACAUGGUCAUGGUCACGGAUACGG (((.((((.((.((((((.((....)).)))..((.....))....))))))))).)))(((.((((((((((((..(((.(((((...))).))))).))))))))))))..))).... ( -49.50) >DroYak_CAF1 1702 120 - 1 CAUCCCCGAUGAGCCGGUGGCCAAUGCGGCCCACCAUCAUGGACAUGGCCACGGGCAUGGUCACGGCCACGGCCACAGUCACGGUCAUGGUCACGGACAUGGCCAUGGUCAUGGAUACGG .....(((((((...(((((((.....)).))))).))))...((((((((.((.((((.((..(((((.((((........)))).)))))...)))))).)).))))))))....))) ( -53.80) >consensus CAUCCCCGAUGAGCCGGUAGCCAAUGCGGCCCACCAUCACGGACAUGGCCACGGGCAUGGUCAUGGCCAUGGCCACGGUCACGGGCAUGGUCACGGACAUGGUCAUGGUCACGGAUACGG .(((((((.(((...(((.((....)).))).....))))))...((((((.((.((((..(.((((((((.((........)).)))))))).)..)))).)).)))))).)))).... (-47.31 = -47.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:37 2006