Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,897,687 – 7,897,887 |
Length | 200 |
Max. P | 0.716071 |
Location | 7,897,687 – 7,897,807 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -40.83 |
Consensus MFE | -37.61 |
Energy contribution | -36.73 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.88 |
Structure conservation index | 0.92 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7897687 120 - 22224390 GAGGCCUCCGCCAAAAAGAAGGCGAAGAAAAAACUCAAGGAAAAGAAAAAGUCAAUAGGCGGCGGAUCAGGCUCUGGUUCGGCUUCGCACCAUUGUCACGCCACGGGCGGCGGUGCAAAU ((((((((((((........)))...((......))..))).........(((....)))...(((((((...)))))))))))))(((((.(((((.((...))))))).))))).... ( -39.40) >DroSim_CAF1 1421 120 - 1 GAGGCCUCCGCUAAAAAGAAGGCGAAGAAAAAACUCAAGGAAAAGAAGAAGUCAAUAGGCGGCGGAUCAGGCUCUGGUUCGGCCUCGCACCAUUGUCACGCCACGGGCGGCGGUGCAAAU ((((((((((((........)))...((......))..)))......(..(((....)))..)(((((((...)))))))))))))(((((.(((((.((...))))))).))))).... ( -40.40) >DroYak_CAF1 1422 120 - 1 GAGGCCUCCGCCAAAAAGAAGGCGAAGAAAAAACUCAAGGAAAAGAAGAAGUCAAUGGGCGGCGGAUCAGGCUCCGGUUCGGCCUCGCACCAUGGUCACGCCCCGGGUGGCGGUGCAAAU ((((((((((((........)))...((......))..)))......((((((....)))..((((......)))).)))))))))(((((...(((((.(....))))))))))).... ( -42.70) >consensus GAGGCCUCCGCCAAAAAGAAGGCGAAGAAAAAACUCAAGGAAAAGAAGAAGUCAAUAGGCGGCGGAUCAGGCUCUGGUUCGGCCUCGCACCAUUGUCACGCCACGGGCGGCGGUGCAAAU ((((((((((((........)))...((......))..)))...(((...(((....)))..((((......)))).)))))))))(((((.......((((...))))..))))).... (-37.61 = -36.73 + -0.88)
Location | 7,897,767 – 7,897,887 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -38.27 |
Consensus MFE | -35.93 |
Energy contribution | -35.93 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.09 |
Mean z-score | -1.62 |
Structure conservation index | 0.94 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7897767 120 - 22224390 AUGAGGAGCGGAGCGCUAGGCUGAAGAUGCUCGAGUCCAAGCUGCUCGGUCUGCAGGAGGAGAUCCGUAAGCUGUCAGAGGAGGCCUCCGCCAAAAAGAAGGCGAAGAAAAAACUCAAGG .((((..(((((.((...((((...(((......)))..))))...)).))))).(((((...(((.............)))..)))))(((........)))..........))))... ( -39.82) >DroSim_CAF1 1501 120 - 1 AUGAGGAGCGCAGCGCUAAGCUGAAGAUGCUCGAGUCCAAACUGCUCGGUCUGCAGGAGGAGAUCCGCAAGCUGUCAGAGGAGGCCUCCGCUAAAAAGAAGGCGAAGAAAAAACUCAAGG .(((((((((((((.....))))....)))))(((.((...(((..(((..(((.(((.....))))))..))).)))....)).)))((((........)))).........))))... ( -38.00) >DroYak_CAF1 1502 120 - 1 AUGAGGAGCGCAGCGCUAAGCUGAAGAUGCUCGAGUCUAAGCUGCUCGGUCUGCAGGAGGAGAUACGCAAGCUGUCAGAGGAGGCCUCCGCCAAAAAGAAGGCGAAGAAAAAACUCAAGG .(((((((((((((.....))))....)))))..((((...(((..(((..(((............)))..))).)))...))))((.((((........)))).))......))))... ( -37.00) >consensus AUGAGGAGCGCAGCGCUAAGCUGAAGAUGCUCGAGUCCAAGCUGCUCGGUCUGCAGGAGGAGAUCCGCAAGCUGUCAGAGGAGGCCUCCGCCAAAAAGAAGGCGAAGAAAAAACUCAAGG .(((((((((((((.....))))....)))))(((.((...(((..(((..(((.(((.....))))))..))).)))....)).)))((((........)))).........))))... (-35.93 = -35.93 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:36 2006