Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 970,678 – 970,786 |
Length | 108 |
Max. P | 0.525889 |
Location | 970,678 – 970,786 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 83.16 |
Mean single sequence MFE | -22.81 |
Consensus MFE | -15.53 |
Energy contribution | -17.17 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.06 |
Mean z-score | -1.71 |
Structure conservation index | 0.68 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 970678 108 - 22224390 UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCU-GGCUAAGGGGUUUUCGU---------UUUUCCA .....((((.((((((((((((((....(((((.(....))).))).))))))))))))))........))))(((((((((..-.....)))))))))...---------....... ( -22.20) >DroVir_CAF1 115331 112 - 1 CUGCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUGCAAUUGAGUAAAAGCAGGUCGAGACAAAGAGUGUGCGAG------CUUUUAAGC ..(((((...((((((((((((((....(((((.(....))).))).))))))))))))))..)).......(((((((...(((..(((.....))).))))------))))))))) ( -24.30) >DroSec_CAF1 53620 108 - 1 UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCC-GGCUAAGGGGUUUUCGU---------UUUUCCA .....((((.((((((((((((((....(((((.(....))).))).))))))))))))))........))))(((((((((..-.....)))))))))...---------....... ( -22.20) >DroEre_CAF1 66737 108 - 1 UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCU-GGCUAAGGGGUUUUCCU---------CUUUCGA ..........((((((((((((((....(((((.(....))).))).))))))))))))))........(((.(((((((((..-.....))))))))).))---------)...... ( -24.10) >DroYak_CAF1 58381 108 - 1 UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCU-GGCUAAGGGGUUUUCCU---------UUUUCGA .....((((.((((((((((((((....(((((.(....))).))).))))))))))))))........))))(((((((((..-.....)))))))))...---------....... ( -22.20) >DroMoj_CAF1 113061 115 - 1 CU---ACUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUGCAAUUGAGUAAAAGCAGUCCGAGACAAAGAGUGUGUGAGCUUGAGCUUUUAAGU .(---((((((.........(((((((((.(((.((.((((((..(((((...)))))..))).))).))))))))))))))........)))))))...((((....))))...... ( -21.83) >consensus UUCCUGCUUUUCAAUUAAAAAUUGUUUUUCACUACAUUUGAGUUGAUUGAUUUUUAAUUGAUUUCAAUUGAGCAAGACUCCUCC_GGCUAAGGGGUUUUCGU_________UUUUCGA ....(((((.((((((((((((((....(((((.(....))).))).))))))))))))))........)))))((((((((........)))))))).................... (-15.53 = -17.17 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:00 2006