Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,895,351 – 7,895,450 |
Length | 99 |
Max. P | 0.949260 |
Location | 7,895,351 – 7,895,450 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.15 |
Mean single sequence MFE | -18.72 |
Consensus MFE | -18.30 |
Energy contribution | -18.22 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.40 |
Structure conservation index | 0.98 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7895351 99 + 22224390 -------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC -------------......----....-................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10) >DroSec_CAF1 6049 99 + 1 -------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC -------------......----....-................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10) >DroEre_CAF1 5765 99 + 1 -------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC -------------......----....-................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10) >DroWil_CAF1 13076 118 + 1 AAACAGUUAAGAAUUAAAAAAAAAACA-AAAAAAAAACUAAACGGCGUCCUCUAACCUGCUUCACUGUCACUUGAGUCACUCGAACUGCUAUCACUCGAACUCGAUGACGACGAAUCGC ...........................-..............((.((((..(......).......((((.((((((...((((...........))))))))))))))))))...)). ( -14.30) >DroYak_CAF1 6013 99 + 1 -------------GUAUAA----AAUA-AACAAACAAACAAAACGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGACGAAUCGC -------------......----....-.................(((((--......).......((((.((((((...((((...........))))))))))))))))))...... ( -17.60) >DroAna_CAF1 6383 100 + 1 -------------GUAUAA----AAUAAAACAAACAAACAAAUCGCGUCC--UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC -------------......----.....................(((...--.....)))((((.(((((.((((((...((((...........))))))))))))))).)))).... ( -20.10) >consensus _____________GUAUAA____AAUA_AACAAACAAACAAAACGCGUCC__UAACCUGCUUCACUGUCGCUCGAGUCACUCGAACUGCUAUCACUCGAACUCGACGACGAUGAAUCGC ..........................................................(.((((.(((((.((((((...((((...........))))))))))))))).)))).).. (-18.30 = -18.22 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:28 2006