Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,890,278 – 7,890,377 |
Length | 99 |
Max. P | 0.888282 |
Location | 7,890,278 – 7,890,377 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -14.82 |
Consensus MFE | -7.00 |
Energy contribution | -7.04 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.47 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7890278 99 + 22224390 CCCCCUCGCCUCGUCCACGCCCCCCCCCUCCC--------ACUCCUUU--------UUUUUUAUAAUGCUCCAGCCAAAUGGAUGA-G-GACAUUGGGUAAUCGCAACCAAACCAAC ..(((...(((((((((.(........)....--------........--------...........((....))....)))))))-)-).....)))................... ( -17.00) >DroSec_CAF1 676 81 + 1 CCCCCU-----CGUCCACCCC-----CCUC--------------C--U--------UUUCUUAUAAUGCUCCAGCCAAUUGGAUAA-G-GACAUUGGGUAAUCGCAACCAAACCAAC ......-----((...((((.-----..((--------------(--(--------(.(((......((....)).....))).))-)-))....))))...))............. ( -14.40) >DroSim_CAF1 676 80 + 1 CCCCCU-----CGUCCACCC------CCUC--------------C--U--------UUUCUUAUAAUGCUCCAGCCAAAUGGAUAA-G-GACAUUGGGUAAUCGCAACCAAACCAAC ......-----((...((((------..((--------------(--(--------(.(((......((....)).....))).))-)-))....))))...))............. ( -14.10) >DroEre_CAF1 723 80 + 1 CCCCCU-----CGUCCACCCCUCCU-------------------------------UUUUUUAUAUUGUUCCAGCCAAAUGGAUAAAG-GACAUUGGGUAAUCGCAACCAAACCAAC ......-----((...((((.((((-------------------------------((...........((((......)))).))))-))....))))...))............. ( -13.10) >DroYak_CAF1 736 112 + 1 CCCCCU-----CGUCCACCCCUCCUCCAUCUCUUCUCUUCUCUUCUUUUUUUUUUCUUUUUGAAAUUGCUCCAGCCAAAUGGAUAAAGGGACAUUGGGUAAUCGCAACCAAACCAAC ..(((.-----.((((....................................((((.....))))....((((......)))).....))))...)))................... ( -15.50) >consensus CCCCCU_____CGUCCACCCC_CC__CCUC______________C__U________UUUUUUAUAAUGCUCCAGCCAAAUGGAUAA_G_GACAUUGGGUAAUCGCAACCAAACCAAC ..................................................................(((....(((.((((..........)))).)))....)))........... ( -7.00 = -7.04 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:27 2006