Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,888,760 – 7,888,861 |
Length | 101 |
Max. P | 0.540758 |
Location | 7,888,760 – 7,888,861 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 77.90 |
Mean single sequence MFE | -36.06 |
Consensus MFE | -26.68 |
Energy contribution | -29.48 |
Covariance contribution | 2.80 |
Combinations/Pair | 1.21 |
Mean z-score | -1.26 |
Structure conservation index | 0.74 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7888760 101 - 22224390 AUAUGAUGCAUGCCGGC--GCCGGCGUUCCAGUUGCCGGUGCUGCCGUUUCGGCAUCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGAUCUAAGCAAA ......(((((((((..--..))))))((((.(((...(((((((.((..((.......))..)).)))))))..)))...)))).............))).. ( -39.10) >DroSec_CAF1 2645 101 - 1 ACAUGAUGCAUGCCGGC--GCCGGCGUUCCAGUUGCCGGUGCUGCCGUUUCGGCGGCUACGGGGCAGCAGCACAACAAAAAUGGACCAAAUGAUCUGAGCAAA ......(((((((((..--..))))))((((.(((...(((((((.((..((.......))..)).)))))))..)))...)))).............))).. ( -40.20) >DroEre_CAF1 2679 101 - 1 ACAUGAUGCAUGCCAGC--GGCGGCGUUCCAAUUUCGGGUGCUGCAGUUUCGGCGGCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGACUUGAGUAAA .(((.((((.((((...--))))))))((((..(((..(((((((.((..((.......))..)).))))))).....)))))))....)))........... ( -32.70) >DroYak_CAF1 2728 101 - 1 AUAUGAUGCAUGCCGGC--GCCGGCGUUCCAGUUGCCGGUGCUGCAGUUCCGACGGCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGAUCUGAGCAAA ......(((((((((..--..))))))((((.(((...(((((((.((((((.......)))))).)))))))..)))...)))).............))).. ( -38.90) >DroAna_CAF1 2497 83 - 1 ACAUGCUGCACGCUCCCUCGGUGGC--------CGGCGGUGCUGCAG--------GCGGUGUGGC----GCCCCACAAGAACGGACCAAACGAUCUGGGCAAG .((((((((..((.((.((((...)--------))).)).)).....--------))))))))..----((((....(((.((.......)).)))))))... ( -29.40) >consensus ACAUGAUGCAUGCCGGC__GCCGGCGUUCCAGUUGCCGGUGCUGCAGUUUCGGCGGCGACGGGGCAGCAGCACAACAAGAAUGGACCAAAUGAUCUGAGCAAA ......((((((((((....)))))))((((.((....(((((((.((((((.......)))))).))))))).....)).)))).............))).. (-26.68 = -29.48 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:23 2006