Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,887,038 – 7,887,194 |
Length | 156 |
Max. P | 0.869936 |
Location | 7,887,038 – 7,887,154 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 97.13 |
Mean single sequence MFE | -48.30 |
Consensus MFE | -44.54 |
Energy contribution | -44.79 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.92 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7887038 116 - 22224390 AGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAACGUUCCGGCAGCGGUGGCGGUCAGUCUGGCAAUGGGAACAACAGCAGCAAUUCGGCCAACAGC .(((........((((((((.(((((((......))))..((.((((((....)))))).))...))).)))))).(.(((....((....)).)))).))......)))...... ( -46.54) >DroSec_CAF1 935 116 - 1 AGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAGCGAUCCGGCAGCGGUGGCGGUCAGUCCGGCAAUGGGAACAACAGCAGCAAUUCGGCCAACAGC .(((.....(((((((((((.(((((..(..(((((((..(((....)))..))))))).)..))))).)))))).).))))...((....))..............)))...... ( -51.70) >DroEre_CAF1 981 116 - 1 AGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAGCGUUCCGGCAGCGGUGGCGGUCAGUCCGGCAAUGGAAACAACAGCAGCAAUUCGGCCAACAGC .(((.....(((((((((((.(((((....((((.(((..(((....)))..)))))))....))))).)))))).).))))...((....))..............)))...... ( -49.30) >DroYak_CAF1 1003 116 - 1 AGGCAAUCACUGGCGAUCGCGACCGUGACAGAGAUCGCGAGCGGGAACGUGAGCGUUCCGGCAGCGGUGGCGGUCAUUCCGGCAAUGGCAACAACAGCAGCAAUUCGGCCAACAGC .(((........((((((((.(((((((......))))..((.((((((....)))))).))...))).))))))......((..((....))...)).))......)))...... ( -45.64) >consensus AGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAGCGUUCCGGCAGCGGUGGCGGUCAGUCCGGCAAUGGGAACAACAGCAGCAAUUCGGCCAACAGC .(((........((((((((.(((((((......))))..((.((((((....)))))).))...))).))))))......((..((....))...)).))......)))...... (-44.54 = -44.79 + 0.25)
Location | 7,887,078 – 7,887,194 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 96.41 |
Mean single sequence MFE | -56.85 |
Consensus MFE | -51.47 |
Energy contribution | -51.10 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.08 |
Mean z-score | -2.07 |
Structure conservation index | 0.91 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7887078 116 - 22224390 GGCGGCAGCAGUAGUGGCGGUGCCGGUUCGACCAGCCAACAGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAACGUUCCGGCAGCGGUGGCGGUCA ..(((((.(.((....))).)))))....((((.(((....)))..((((((.(..((((((((.......)).))))))((.((((((....)))))).)).))))))).)))). ( -54.80) >DroSec_CAF1 975 116 - 1 GGCGGCGGCAGUAGUGGUGGUGCCGGUUCGACCAGCCAACAGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAGCGAUCCGGCAGCGGUGGCGGUCA .(((((((((.((....)).))))((.....)).)))..(((.......)))))((((((.(((((..(..(((((((..(((....)))..))))))).)..))))).)))))). ( -60.20) >DroEre_CAF1 1021 116 - 1 GGCGGCGGCAGUAGUAGCGGUGCCGGUUCGGCCAGCCAACAGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAGCGUUCCGGCAGCGGUGGCGGUCA .((.((.((....)).)).))((((((...(((........)))....))))))((((((.(((((....((((.(((..(((....)))..)))))))....))))).)))))). ( -56.80) >DroYak_CAF1 1043 116 - 1 GGCGGCGGUAGUAGUGGCGGUGCCGGUUCGGCCAGCCAACAGGCAAUCACUGGCGAUCGCGACCGUGACAGAGAUCGCGAGCGGGAACGUGAGCGUUCCGGCAGCGGUGGCGGUCA (.(((.(((.((..((((.(.((((...))))).))))....)).))).))).)((((((.(((((((......))))..((.((((((....)))))).))...))).)))))). ( -55.60) >consensus GGCGGCGGCAGUAGUGGCGGUGCCGGUUCGACCAGCCAACAGGCAAUCACUGGCGAUCGCGACCGUGACAGGGAUCGCGAGCGGGAACGUGAGCGUUCCGGCAGCGGUGGCGGUCA .((.((.((....)).)).))((((((..((...(((....)))..))))))))((((((.(((((((......))))..((.((((((....)))))).))...))).)))))). (-51.47 = -51.10 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:17 2006