Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,873,756 – 7,873,852 |
Length | 96 |
Max. P | 0.717474 |
Location | 7,873,756 – 7,873,852 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -35.10 |
Consensus MFE | -28.98 |
Energy contribution | -29.10 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.83 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7873756 96 - 22224390 ACGCACAAGAUGCGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUAUGCCGCGG-----------------ACCACUUGACUUUUCU------- .....(((((((((.((((((..(((...(((((......)))))..))))))))).)))))...(((((.....)))))-----------------....))))........------- ( -33.50) >DroSec_CAF1 5518 99 - 1 ---CACAAGAUACGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUA-GCCGCGG-----------------ACCAGUUGACUUUUCUCAGUCAC ---..........((..((((..(((...(((((......)))))..)))...(((((((.......)))))-)))))).-----------------.))...(((((......))))). ( -30.00) >DroSim_CAF1 5534 100 - 1 ---CACAAGAUGCGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUAUGCCGCGG-----------------ACCACUUGACUUUUCUCAGUCAC ---..(((((((((.((((((..(((...(((((......)))))..))))))))).)))))...(((((.....)))))-----------------....))))............... ( -33.50) >DroEre_CAF1 5643 119 - 1 ACGCACAAGAUGCGGAGCGCGAUGCCUUCACGUAUGCCAUUACGUUCGGCUGCGUUACGCAUACGCCGCGUAUGCCGCGUAUGCCGCUUUUGGCGCGACCACUUGACUU-UCUCAGUUCU .(((.(((((.(((.((((((..(((...(((((......)))))..)))))))))..((((((((.((....)).))))))))))))))))..)))............-.......... ( -43.40) >consensus ___CACAAGAUGCGGAACGCGAUGCCUUCACGUAUGCCAUUACGUUCGGUUGCGUUACGCAUACGCCGCGUAUGCCGCGG_________________ACCACUUGACUUUUCUCAGUCAC .....(((((((((.((((((..(((...(((((......)))))..))))))))).))))).(((.((....)).)))......................))))............... (-28.98 = -29.10 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:13 2006