Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 967,809 – 967,911 |
Length | 102 |
Max. P | 0.505839 |
Location | 967,809 – 967,911 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 93.23 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -33.10 |
Energy contribution | -33.43 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.89 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 967809 102 + 22224390 CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUCUGCUGGUGU--------CCCC-C .(((.....((((((((......).))))))).....))).((((.....(((((((((.(((((((......)))..))))..))))))))).)))--------)...-. ( -36.80) >DroSec_CAF1 50764 103 + 1 CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUCUGCUGGUGU--------CCCCUC .(((.....((((((((......).))))))).....))).((((.....(((((((((.(((((((......)))..))))..))))))))).)))--------)..... ( -36.80) >DroYak_CAF1 55312 111 + 1 CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUGUGCUGAUGUGCUGGGCUCCCCUC ............((((((((....)))))).........(..(((.....(((((.(((.(((((((......)))..))))..))).)))))...)))..)))....... ( -38.50) >consensus CGUUUGACGUUUGCUGCUGACAUGUCAGCAAAAUUUUAACUGGCAAUUUGCAGCAGAGCUCGCGAGCUCCUGUGCUGCCGUGCUGCUCUGCUGGUGU________CCCCUC .(((.....((((((((......).))))))).....)))..........(((((((((.(((((((......)))..))))..))))))))).................. (-33.10 = -33.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:59 2006