Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,872,196 – 7,872,338 |
Length | 142 |
Max. P | 0.929864 |
Location | 7,872,196 – 7,872,311 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -34.90 |
Consensus MFE | -21.29 |
Energy contribution | -22.58 |
Covariance contribution | 1.29 |
Combinations/Pair | 1.08 |
Mean z-score | -2.08 |
Structure conservation index | 0.61 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7872196 115 + 22224390 ---GGGAUCAUGGGACAUGGUAGAUGG-GCUACCAACAGCCAGGAGCUUACCACAUGCAC-CCAUGUGUUUCUUUCACAAAAAGGGGAAUCCUCUAGUCGCCCCAUUCGAUUCCCUAUUA ---(((((((((((.(.((((.(.(((-....))).).))))((((.....((((((...-.))))))(..((((.....))))..)....))))....).)))))..))))))...... ( -33.70) >DroSec_CAF1 3925 116 + 1 ---GGGAUCAUGGGACAUGGUAGAUGGGGCUACCAGCAGCCAGGAGCUUACCACAUGCACCCCAUGUGUUUCUUUCACAA-AAGGGGAAUCCCCCAGUCGCCUCAUUCCAUUCCCUGUUA ---((((..((((((...(((...(((((......(((....((......))...))).((((.((((.......)))).-..))))....)))))...)))...))))))))))..... ( -39.50) >DroSim_CAF1 3915 114 + 1 ---GGGAUCAUGGGACAUGGUAGAUGG-GCUACCAGCAGCCAGGAGCUUACCACAUGCAC-CCAUGUGUUUCUUUCACAA-AAGGGGAAUCCCCCAGUCGCCUCGUUCCAUUCCCUGUUA ---((((..(((((((.((((.(.(((-....))).).))))(..((....((((((...-.))))))............-..((((....))))....))..))))))))))))..... ( -40.80) >DroEre_CAF1 3950 88 + 1 ---GGGACCAUGGGACAUGGUAGAUGG-GCUUCCAGCAGCCAGGAGCUUACCACAUGCAC-CCAUGUGUUACUUUUCCA--------------------------UUCCAU-CCCUUUAA ---((((..((((((...(((((.(((-(((.((........)))))))).((((((...-.))))))))))).)))))--------------------------)....)-)))..... ( -26.60) >DroYak_CAF1 5295 94 + 1 GUGGGGAUCAUGGGACAUGGUAGAUGG-GCUACCAGCAGCCAGGAGCUUACCACAUGCAC-CCAUGUGUUUCCUUUACAA-AAGGA-------------------UUC----CCCUUUAA ..(((((.((((((...((((((....-.))))))(((....((......))...))).)-)))))....(((((.....-)))))-------------------.))----)))..... ( -33.90) >consensus ___GGGAUCAUGGGACAUGGUAGAUGG_GCUACCAGCAGCCAGGAGCUUACCACAUGCAC_CCAUGUGUUUCUUUCACAA_AAGGGGAAUCC_C_AGUCGCC_C_UUCCAUUCCCUGUUA ...(((....(((....((((((......))))))....)))((((.....((((((.....))))))...............((((....))))..........))))...)))..... (-21.29 = -22.58 + 1.29)
Location | 7,872,232 – 7,872,338 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -18.01 |
Consensus MFE | -12.87 |
Energy contribution | -13.56 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.71 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7872232 106 + 22224390 CAGGAGCUUACCACAUGCAC-CCAUGUGUUUCUUUCACAAAAAGGGGAAUCCUCUAGUCGCCCCAUUCGAUUCCCUAUUAAUCCAACCCUAUCAGUACCUUCACGCU .(((.(((...((((((...-.))))))...............((((((((.................)))))))).................))).)))....... ( -19.53) >DroSec_CAF1 3962 105 + 1 CAGGAGCUUACCACAUGCACCCCAUGUGUUUCUUUCACAA-AAGGGGAAUCCCCCAGUCGCCUCAUUCCAUUCCCUGUUAAUCCAACCCUAUCAGU-CCUUCACGCU ((((.......((((((.....))))))............-..((((....))))..................))))...................-.......... ( -18.20) >DroSim_CAF1 3951 104 + 1 CAGGAGCUUACCACAUGCAC-CCAUGUGUUUCUUUCACAA-AAGGGGAAUCCCCCAGUCGCCUCGUUCCAUUCCCUGUUAAUCCAACCCUAUCAGU-CCUUCACGCU ..(((((....((((((...-.))))))............-..((((....)))).........)))))...........................-.......... ( -20.90) >DroYak_CAF1 5334 81 + 1 CAGGAGCUUACCACAUGCAC-CCAUGUGUUUCCUUUACAA-AAGGA-------------------UUC----CCCUUUAAAUCCAACUCUAUCAGU-CCUUCAAUCA .((((......((((((...-.))))))............-..(((-------------------((.----.......)))))...........)-)))....... ( -13.40) >consensus CAGGAGCUUACCACAUGCAC_CCAUGUGUUUCUUUCACAA_AAGGGGAAUCCCCCAGUCGCCUCAUUCCAUUCCCUGUUAAUCCAACCCUAUCAGU_CCUUCACGCU .(((.(((...((((((.....))))))...............(((((((...................))))))).................))).)))....... (-12.87 = -13.56 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:12 2006