Locus 2938

Sequence ID X_DroMel_CAF1
Location 7,865,780 – 7,865,900
Length 120
Max. P 0.737621
window4819

overview

Window 9

Location 7,865,780 – 7,865,900
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.58
Mean single sequence MFE -41.50
Consensus MFE -30.80
Energy contribution -30.88
Covariance contribution 0.08
Combinations/Pair 1.25
Mean z-score -1.84
Structure conservation index 0.74
SVM decision value 0.44
SVM RNA-class probability 0.737621
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7865780 120 + 22224390
AUGCGGAUUGUUAACGGUGGACAGUAUCGCCACCGUAAGAUCGCGUUGGUGCGACAUAAGCAACAGAACAUUGGACAGAUCCGGCGUAUAAAUGUUGCACUGCAACGGGAUACGGCCAUA
....((((((((.(((((((.(......))))))))......(..(((.(((.......))).)))..)....)))).))))(((((((...((((((...))))))..)))).)))... ( -38.70)
>DroSec_CAF1 1553 120 + 1
AUGCGGAUUGUUAACGGUGGACAGAAUGGCCACCGUAAGGUCGCGCUGGUGCGACAUAAGCAACAGAACAUUGGACAGAUCCGGGGUGUAUAUGUUGAACUGUAACGGGAUACGGCCAUA
...(((((((((.(((((((.(.....).)))))))...((((((....))))))..................)))).)))))((.(((((.(((((.....)))))..))))).))... ( -40.90)
>DroSim_CAF1 2385 120 + 1
AUGCGGAUUGUUAAUGGUGGACAGAAUGGCCACCGUAAGGUCGCGCUGGUGCGACAUAAGCAACAGAACAUUGGACAGAUCCGGGGUGUAUAUGUUGAACUGCAACGGGAUACGGCCAUA
...(((((((((.(((((((.(.....).)))))))...((((((....))))))..................)))).)))))((.(((((.(((((.....)))))..))))).))... ( -41.20)
>DroEre_CAF1 11729 120 + 1
AUGCGGAUUGUUGACGGUGGACAGAAUGGCCACCGUUAGUUUGCGCUGGUGCGGCAUCAUCAUCAGCACAUUGGACAGAUCCGGGGUGUAUAUGUUGUACUGCACCGGGACAUGGCGAUA
..((((((...(((((((((.(.....).))))))))))))))).(((((((((...((.(((..((((.(((((....))))).))))..))).))..)))))))))............ ( -46.00)
>DroYak_CAF1 12353 120 + 1
GUGCGGAUGGUUGACGGUGGACAGCAGGGCCACCGUCGGGUUGCGUUGCUGCAGCAUGAGCAUGUGGACAUUGGACAGAUCCGGGGUGUAAAUGUUGUACUGCACCGGGAGAGGAGGAAA
((((((....((((((((((.(......)))))))))))((((((....))))))...(((((.((.((.(((((....))))).)).)).)))))...))))))............... ( -40.70)
>consensus
AUGCGGAUUGUUAACGGUGGACAGAAUGGCCACCGUAAGGUCGCGCUGGUGCGACAUAAGCAACAGAACAUUGGACAGAUCCGGGGUGUAUAUGUUGAACUGCAACGGGAUACGGCCAUA
...(((((((((.(((((((.(......))))))))...((((((....))))))..................))))).))))..((((...(((((.....)))))..))))....... (-30.80 = -30.88 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:11 2006