Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,865,290 – 7,865,461 |
Length | 171 |
Max. P | 0.842188 |
Location | 7,865,290 – 7,865,401 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.85 |
Mean single sequence MFE | -35.69 |
Consensus MFE | -20.34 |
Energy contribution | -22.10 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.26 |
Mean z-score | -1.77 |
Structure conservation index | 0.57 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7865290 111 + 22224390 UGCAUCCAUCAUCAAAGGCCUCGUCGUAGUUUUGCACACUGUAUGCCCCCUUUGGUGACUUCGGCUCCUU------CGUUUCCAUUACCAUAAAGCCCUUGGUGAUGGAAAUAUCA---A .((.....((((((((((...(((.(((((.......))))))))...)))))))))).....)).....------.(((((((((((((.........)))))))))))))....---. ( -32.60) >DroSec_CAF1 1069 117 + 1 CGCAUCCAUCAUCAAACGCCUCUUCGUAGCUUUGCACACUGUAAGCACCCUUUGGGGGCUUCGGGUCCUCCGCCGCCGUUUCCAUUACCAUGAAGCCCUUGGUGAUGCUAAUGUCA---A .((((.(((((((((..((.((...(((((((.((.....))))))......(((..((..(((........)))..))..))).)))...)).))..)))))))))...))))..---. ( -32.70) >DroSim_CAF1 1901 117 + 1 CGCAUCCAUCAUCAAACGCCUCUUCGUAGCUUUGCACACUGUAAGCACCCUUUGGGGGCUUCGGGUCCUCCGCCGCCGUUUCCAUCACCAUGAAGCCCUUGGUGAUGCUAAUGUCA---A .((((.(((((((((...((.....((.((((.((.....)))))))).....))(((((((((((....................))).)))))))))))))))))...))))..---. ( -32.05) >DroEre_CAF1 11242 114 + 1 CGCAUCCUUUAGCACUGCCCUCUUGGUAGCUUUGCAAACUGUAACCACCACUUGGAGGCGUCGGGUGCUC------CGUUUCCAUUACCAAAAAGCCCUUGGUAAUGGGAACGUUGGGCU .((..((...(((((((((((((((((.(..((((.....))))).))))...))))).))..)))))).------(((((((((((((((.......)))))))))))))))..)))). ( -42.40) >DroYak_CAF1 11863 114 + 1 CGCAUCCCUUCUCGCUGGCCUCCUGGUAGCUCUCCAAGGAGUAAGCACCUCGCGGAGGCGUCUGCUGCUC------CGUUUCCAUUACCAUGAAGCCCUGGGUAACGGGAAUGAAGCCCC .............((..((((((.(((.((((((....)))..))))))....))))))....)).(((.------(((((((.(((((...........))))).))))))).)))... ( -38.70) >consensus CGCAUCCAUCAUCAAAGGCCUCUUCGUAGCUUUGCACACUGUAAGCACCCUUUGGAGGCUUCGGGUCCUC______CGUUUCCAUUACCAUGAAGCCCUUGGUGAUGGGAAUGUCA___A .................((((((..(..(((.(((.....))))))..)....)))))).................((((((((((((((.........))))))))))))))....... (-20.34 = -22.10 + 1.76)
Location | 7,865,364 – 7,865,461 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 58.68 |
Mean single sequence MFE | -27.36 |
Consensus MFE | -9.88 |
Energy contribution | -10.76 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.47 |
Mean z-score | -2.21 |
Structure conservation index | 0.36 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7865364 97 + 22224390 UCCAUUACCAUAAAGCCCUUGGUGAUGGAAAUAUCA---AAUUUAGGUUUGACACCUGCUAGCGUUGC------------CUUUGACUCAGCAUCAUCGCUGGCUUU--------CUUUU ((((((((((.........))))))))))....(((---(((....)))))).....(((((((.(((------------..........)))....)))))))...--------..... ( -29.80) >DroSec_CAF1 1149 85 + 1 UCCAUUACCAUGAAGCCCUUGGUGAUGCUAAUGUCA---AUUUUAGGUUUGACAGCUGGAAGCGUUG------------------------CAUCUUCGCUGGCUUU--------CUUUU ...........((((((..(((.(((((...(((((---(........))))))((.....))...)------------------------)))).)))..))))))--------..... ( -23.60) >DroSim_CAF1 1981 85 + 1 UCCAUCACCAUGAAGCCCUUGGUGAUGCUAAUGUCA---AUUUUAGGUUUGACAGCUGGAAGCGUUG------------------------CAUCUUCGCUGGCUUU--------CUUUU ..((((((((.(.....).))))))))....(((((---(........))))))...((((((...(------------------------(......))..)))))--------).... ( -24.90) >DroEre_CAF1 11316 96 + 1 UCCAUUACCAAAAAGCCCUUGGUAAUGGGAACGUUGGGCUUCUUAGGCUCGACAGCAUUGAGCGAUCC------------CUCUGACUGA------------GCCGAAGACUGAGCAGCU (((((((((((.......))))))))))).......((((.(((((((((((.....)))))).....------------(((.....))------------).......))))).)))) ( -32.10) >DroYak_CAF1 11937 100 + 1 UCCAUUACCAUGAAGCCCUGGGUAACGGGAAUGAAGCCCCCAUUGGGCUCGACCACCUUAAGUGAUCCCCCCUCUGCCCCCUCUGACUGA------------GCCUU--------CUGCU ...........((((....(((((..(((...((.((((.....))))))((.(((.....))).))..)))..))))).(((.....))------------).)))--------).... ( -26.40) >consensus UCCAUUACCAUGAAGCCCUUGGUGAUGGGAAUGUCA___AUUUUAGGUUUGACAGCUGGAAGCGUUGC____________CU_UGACU_A_CAUC_UCGCUGGCUUU________CUUUU ((((((((((.........)))))))))).................(((((.......)))))......................................................... ( -9.88 = -10.76 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:09 2006