Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,840,562 – 7,840,655 |
Length | 93 |
Max. P | 0.849552 |
Location | 7,840,562 – 7,840,655 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 85.28 |
Mean single sequence MFE | -30.94 |
Consensus MFE | -26.29 |
Energy contribution | -26.40 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.05 |
Structure conservation index | 0.85 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7840562 93 - 22224390 AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUGUGUGCGUGUGCACGCACAGCAGAGUUCACAAUAACAGUGAU------AA--UUGCA-- .(((....(((((.((((..((........))..))))....((((((((....)))))))).)))))..((((.......)))).------..--.))).-- ( -31.60) >DroEre_CAF1 25979 101 - 1 AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUG--UGCGUGUGCACGCACACCAGAGUUCACAACAAUAGUUAAUAUCAGAAUGUUAAUAU .((((((((.(((((((((....)))).......))))).)))))--)))(((((....))))).................((((((((....)))))))).. ( -28.81) >DroYak_CAF1 21274 93 - 1 AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUG--UGCGUGUGCACGCACAGCAGAGUUCGCAAUAAUAGUGAA------ACUGUUGCA-- .((((((((.(((((((((....)))).......))))).)))))--)))((((....)))).(((((((((((.......))).)------))).)))).-- ( -32.41) >consensus AGCAUAUGUCUGCCGCCAUCGACAUGGGCAUCACUGGCACACGUG__UGCGUGUGCACGCACAGCAGAGUUCACAAUAAUAGUGAA______AAUGUUGCA__ .((.((((((..........)))))).)).((((((((((((((....))))))))..(.((......)).).......)))))).................. (-26.29 = -26.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:53 2006