Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 967,640 – 967,738 |
Length | 98 |
Max. P | 0.939046 |
Location | 967,640 – 967,738 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -17.65 |
Consensus MFE | -16.72 |
Energy contribution | -16.72 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.95 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 967640 98 + 22224390 UUCCAACACUCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUUCAACUCCACUUGACGCUUGUCUCCAUCUCCAUC-------- ..............(((((.((((..((....((((((....................))))))((((......))))))..)))).)))))......-------- ( -17.95) >DroSec_CAF1 50581 103 + 1 UUUCAACACUCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUUCAACUUCACUUGACGCUUGUCUCCAUCUCCAUC---AUCAU ..............(((((.((((..((....((((((....................))))))((((......))))))..)))).)))))......---..... ( -17.95) >DroYak_CAF1 55088 106 + 1 UUUCAACACCCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUACAACUCCACUUGACGCUUGUCCCCAUCUCCAUCUCUAUCUC ..............(((((.((((..((....((((((....................)))))).(((......))).))..)))).))))).............. ( -17.05) >consensus UUUCAACACUCAUCGAUGGCGACACCCGCUGCACGAGGCUAAACAAAAUCGAAACAAAUCUCGUUCAACUCCACUUGACGCUUGUCUCCAUCUCCAUC___AUC__ ..............(((((.((((..((....((((((....................)))))).(((......))).))..)))).))))).............. (-16.72 = -16.72 + -0.00)
Location | 967,640 – 967,738 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -30.67 |
Consensus MFE | -30.39 |
Energy contribution | -30.50 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.82 |
Structure conservation index | 0.99 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.939046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 967640 98 - 22224390 --------GAUGGAGAUGGAGACAAGCGUCAAGUGGAGUUGAACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGAGUGUUGGAA --------......(((((.((((..(((...(((..(((((((((((((......)))))))))))))..)))...)))..)))).))))).............. ( -31.50) >DroSec_CAF1 50581 103 - 1 AUGAU---GAUGGAGAUGGAGACAAGCGUCAAGUGAAGUUGAACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGAGUGUUGAAA .....---......(((((.((((..(((...((((.(((((((((((((......))))))))))))).))))...)))..)))).))))).............. ( -31.30) >DroYak_CAF1 55088 106 - 1 GAGAUAGAGAUGGAGAUGGGGACAAGCGUCAAGUGGAGUUGUACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGGGUGUUGAAA ..............(((((.((((..(((...(((..((((.((((((((......)))))))).))))..)))...)))..)))).))))).............. ( -29.20) >consensus __GAU___GAUGGAGAUGGAGACAAGCGUCAAGUGGAGUUGAACGAGAUUUGUUUCGAUUUUGUUUAGCCUCGUGCAGCGGGUGUCGCCAUCGAUGAGUGUUGAAA ..............(((((.((((..(((...((((.(((((((((((((......))))))))))))).))))...)))..)))).))))).............. (-30.39 = -30.50 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:58 2006